Scaffolding with assembly likelihood optimization
☆21Dec 14, 2020Updated 5 years ago
Alternatives and similar repositories for SWALO
Users that are interested in SWALO are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Iterative error correction of long reads☆13Dec 9, 2022Updated 3 years ago
- Chromosome-level scaffolding using multiple references☆170Sep 8, 2024Updated 2 years ago
- finshingTool☆54Nov 22, 2016Updated 9 years ago
- Tool (experimental) to compute layout from overlaps with spectral algorithm☆11Nov 28, 2017Updated 8 years ago
- A new algorithm for scaffolding☆10Sep 18, 2018Updated 8 years ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Minimalistic aligner which uses Minimap for input mapping locations and Edlib for fast bitvector alignment.☆10Jul 16, 2017Updated 9 years ago
- De novo genome assembler.☆12Jul 30, 2018Updated 8 years ago
- A draft genome scaffolder that uses multiple reference genomes in a graph-based approach.☆47Feb 17, 2021Updated 5 years ago
- Scripts to split reference and run mummer in parallel on an SGE cluster☆11Oct 14, 2016Updated 10 years ago
- KAUST Assembly Read Error Correction Tool☆15Aug 15, 2015Updated 11 years ago
- Software accompanying "HINGE: Long-Read Assembly Achieves Optimal Repeat Resolution"☆65Oct 15, 2020Updated 6 years ago
- ☆26Oct 31, 2019Updated 7 years ago
- TULIP - The Uncorrected Long read Itegration Pipeline☆27Jan 15, 2018Updated 8 years ago
- gearTool☆14Jun 29, 2025Updated last year
- End-to-end encrypted email - Proton Mail • AdSpecial offer: 40% Off Yearly / 80% Off First Month. All Proton services are open source and independently audited for security.
- ☆15Jul 3, 2018Updated 8 years ago
- High-performance error correction for Illumina resequencing data☆75May 31, 2016Updated 10 years ago
- Population-scale detection of non-reference sequence variants using colored de Bruijn Graphs☆27Apr 29, 2024Updated 2 years ago
- Scaffolding with RNA-seq read alignment☆21Jul 10, 2018Updated 8 years ago
- a long-read error correction tool using the multi-string Burrows Wheeler Transform☆44Jul 7, 2020Updated 6 years ago
- Just Annotate My Genome☆19May 21, 2026Updated 5 months ago
- The Dagstuhl Format for Assembly☆13Oct 16, 2017Updated 9 years ago
- This tool is for users to upgrade their metagenomics assemblies using long reads. This includes fixing mis-assemblies and scaffolding/gap…☆13Mar 17, 2016Updated 10 years ago
- BESST - scaffolder for genomic assemblies☆58Jul 6, 2023Updated 3 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- ARBitR: Assembly Refinement with Barcode-identity-tagged Reads☆10Oct 22, 2020Updated 6 years ago
- source code for HpcGridRunner☆17Aug 2, 2021Updated 5 years ago
- Detecting NUMTs from WGS☆14Nov 19, 2023Updated 2 years ago
- Graphical interactive tool for the visualization of sequence graphs in GFA format.☆76Feb 19, 2019Updated 7 years ago
- Accurate, Lightweight Clustering of de novo Transcriptomes using Fragment Equivalence Classes☆31Jun 16, 2024Updated 2 years ago
- 🚝RAILS and 👞🔨Cobbler: Assembly Improvement by Long Sequence Scaffolding/Gap-filling☆27Apr 1, 2026Updated 6 months ago
- Reference genome quality scores☆20Dec 17, 2020Updated 5 years ago
- Linear-time, low-memory construction of variation graphs☆20Oct 14, 2026Updated 2 weeks ago
- Correction of palindromes in long reads from PacBio and Nanopore☆14Mar 1, 2022Updated 4 years ago
- Simple, predictable pricing with DigitalOcean hosting • AdAlways know what you'll pay with monthly caps and flat pricing. Enterprise-grade infrastructure trusted by 600k+ customers.
- Tool for decomposition centromeric assemblies and long reads into monomers☆39Sep 17, 2022Updated 4 years ago
- This repository is deprecated, please use the link to the right.☆23Dec 11, 2018Updated 7 years ago
- Pipeline for Evaluating Prokaryotic References☆11Sep 16, 2016Updated 10 years ago
- de novo targeted gene assembly☆22Apr 16, 2021Updated 5 years ago
- CAMSA: a tool for Comparative Analysis and Merging of Scaffold Assemblies☆26Apr 13, 2020Updated 6 years ago
- showTree can visualize the phylogeny, protein sequences and protein domains of a gene family in one figure.☆31Mar 28, 2019Updated 7 years ago
- SSPACE Basic, SSAKE-based Scaffolding of Pre-Assembled Contigs after Extension☆49Jan 17, 2021Updated 5 years ago