kdm9 / kWIPLinks
De novo estimates of genetic relatedness from next-gen sequencing data
☆45Updated 6 years ago
Alternatives and similar repositories for kWIP
Users that are interested in kWIP are comparing it to the libraries listed below
Sorting:
- Merge transcriptome assemblies☆31Updated 8 years ago
- Classify sequencing reads using MinHash.☆48Updated 5 years ago
- Metagenomic profiling and phylogenetic distances via common kmers☆42Updated 4 years ago
- Accurate, Lightweight Clustering of de novo Transcriptomes using Fragment Equivalence Classes☆31Updated last year
- Assembler for raw de novo genome assembly of long uncorrected reads.☆37Updated 5 years ago
- Using kallisto for metagenomic analysis☆50Updated 8 years ago
- Utility program for extracting sequences from a fasta/fastq file☆36Updated 7 months ago
- reference free variant assembly☆33Updated 2 years ago
- blast, shmlast☆22Updated 4 years ago
- Validate and edit small eukaryotic genome assemblies☆31Updated 2 years ago
- Histosketching Using Little Kmers☆57Updated 2 years ago
- Scripts for implementing read until and other examples.☆31Updated 5 years ago
- REINDEER REad Index for abuNDancE quERy☆57Updated last month
- Find Unique genomic Regions☆30Updated last week
- Converts Prokka GFF3 files to EMBL files for uploading annotated assemblies to EBI☆29Updated 6 years ago
- Alternative taxonomic consensus algorithms based on the NCBI taxonomy tree☆16Updated last year
- Identifying repeats in high-throughput sequencing data☆16Updated last year
- Rapid competitive read demulitplexer. Made with tries.☆23Updated 2 months ago
- ☆19Updated 8 years ago
- Tools for making blobplots or Taxon-Annotated-GC-Coverage plots (TAGC plots) to visualise the contents of genome assembly data sets as a …☆46Updated 3 years ago
- de novo targeted gene assembly☆23Updated 4 years ago
- Ococo: the first online variant and consensus caller. Call genomic consensus directly from an unsorted SAM/BAM stream.☆47Updated 6 years ago
- my PhD thesis☆36Updated 6 years ago
- An integrated high performance bioinformatics toolkit☆23Updated 6 years ago
- Annotated Genome Optimization Using Transcriptome Information☆20Updated 5 years ago
- Preprocessing paired-end reads produced with experiment-specific protocols☆32Updated 7 years ago
- Developments in next generation sequencing: instruments, read lengths, throughput. See☆27Updated 7 years ago
- Reference genome quality scores☆21Updated 4 years ago
- OrthoFiller: Identifying missing annotations for evolutionarily conserved genes.☆23Updated 2 years ago
- Horizontal Gene Transfer Detection by Mapping Sequencing Reads☆22Updated 7 years ago