kdm9 / kWIPLinks
De novo estimates of genetic relatedness from next-gen sequencing data
☆45Updated 5 years ago
Alternatives and similar repositories for kWIP
Users that are interested in kWIP are comparing it to the libraries listed below
Sorting:
- Tools for making blobplots or Taxon-Annotated-GC-Coverage plots (TAGC plots) to visualise the contents of genome assembly data sets as a …☆46Updated 3 years ago
- Merge transcriptome assemblies☆31Updated 8 years ago
- Assembler for raw de novo genome assembly of long uncorrected reads.☆37Updated 5 years ago
- GATB Minia assembly pipeline☆30Updated 2 years ago
- Using kallisto for metagenomic analysis☆50Updated 8 years ago
- Assembly by Reduced Complexity (ARC)☆41Updated 9 years ago
- Metagenomic profiling and phylogenetic distances via common kmers☆42Updated 3 years ago
- Validate and edit small eukaryotic genome assemblies☆31Updated 2 years ago
- Clustering phylogenetic trees with python☆25Updated 9 months ago
- Exploration of controlled loss of quality values for compressing CRAM files☆34Updated 2 years ago
- OrthoFiller: Identifying missing annotations for evolutionarily conserved genes.☆22Updated 2 years ago
- Scripts for implementing read until and other examples.☆31Updated 5 years ago
- Analysis tool for Nanopore sequencing data☆33Updated 6 years ago
- Fast and pretty dotplots for whole genomes assemblies using minimap and R/ggplot2☆74Updated 8 years ago
- A toolkit for annotation of transposable element families from unassembled sequence reads☆30Updated 2 years ago
- REINDEER REad Index for abuNDancE quERy☆58Updated 10 months ago
- Converts Prokka GFF3 files to EMBL files for uploading annotated assemblies to EBI☆29Updated 6 years ago
- Error correction for Oxford Nanopore data☆47Updated 4 years ago
- k-mer counting software☆39Updated 3 years ago
- Classify sequencing reads using MinHash.☆48Updated 5 years ago
- Adapter trimming and virtual library creation for Illumina Nextera Mate Pair libraries.☆54Updated 7 years ago
- Implementation of a polymorphism aware phylogenetic model using HYPHY☆19Updated 3 years ago
- Edinburgh Genomics MinION training 2016☆33Updated 8 years ago
- NaS is a hybrid approach developped to take advantage of data generated using MinION device. We combine Illumina and Oxford Nanopore tech…☆15Updated 8 years ago
- Kinship (genetic relatedness) using GBS (genotyping-by-sequencing) with Depth adjustment☆21Updated 2 weeks ago
- An integrated high performance bioinformatics toolkit☆23Updated 6 years ago
- adds sample names and read-group (RG) tags to BAM alignments☆51Updated 4 years ago
- A statistical framework for ploidy estimation using NGS short-read data☆59Updated 7 years ago
- Horizontal Gene Transfer Detection by Mapping Sequencing Reads☆21Updated 7 years ago
- Find Unique genomic Regions☆29Updated 2 months ago