kdm9 / kWIPLinks
De novo estimates of genetic relatedness from next-gen sequencing data
☆45Updated 6 years ago
Alternatives and similar repositories for kWIP
Users that are interested in kWIP are comparing it to the libraries listed below
Sorting:
- Metagenomic profiling and phylogenetic distances via common kmers☆42Updated 4 years ago
- Merge transcriptome assemblies☆31Updated 9 years ago
- Classify sequencing reads using MinHash.☆48Updated 5 years ago
- Using kallisto for metagenomic analysis☆49Updated 8 years ago
- Preprocessing paired-end reads produced with experiment-specific protocols☆32Updated 7 years ago
- Assembler for raw de novo genome assembly of long uncorrected reads.☆36Updated 5 years ago
- Scripts for implementing read until and other examples.☆32Updated 5 years ago
- de novo targeted gene assembly☆23Updated 4 years ago
- REINDEER REad Index for abuNDancE quERy☆56Updated 3 months ago
- blast, shmlast☆21Updated 5 years ago
- reference free variant assembly☆34Updated 2 years ago
- Histosketching Using Little Kmers☆56Updated 2 years ago
- Accurate, Lightweight Clustering of de novo Transcriptomes using Fragment Equivalence Classes☆31Updated last year
- Runs a combination of tools to generate structural variant calls on short-read whole-genome sequencing data☆22Updated 3 years ago
- A tool to reduce the size of Oxford Nanopore Technologies' datasets without losing information☆30Updated last year
- Converts Prokka GFF3 files to EMBL files for uploading annotated assemblies to EBI☆29Updated 6 years ago
- An integrated high performance bioinformatics toolkit☆23Updated 6 years ago
- Validate and edit small eukaryotic genome assemblies☆30Updated 2 years ago
- my PhD thesis☆36Updated 6 years ago
- Utility program for extracting sequences from a fasta/fastq file☆35Updated 9 months ago
- Exploration of controlled loss of quality values for compressing CRAM files☆35Updated 2 years ago
- Developments in next generation sequencing: instruments, read lengths, throughput. See☆27Updated 7 years ago
- Tools for making blobplots or Taxon-Annotated-GC-Coverage plots (TAGC plots) to visualise the contents of genome assembly data sets as a …☆47Updated 3 years ago
- Ococo: the first online variant and consensus caller. Call genomic consensus directly from an unsorted SAM/BAM stream.☆46Updated 6 years ago
- My experimental tools on top of htslib. NOT OFFICIAL!!!☆57Updated 3 weeks ago
- SAMsift: advanced filtering and tagging of SAM/BAM alignments using Python expressions.☆23Updated 3 weeks ago
- ☆18Updated 8 years ago
- OrthoFiller: Identifying missing annotations for evolutionarily conserved genes.☆23Updated 2 years ago
- An ultra fast and accurate paired-end adapter trimmer that needs no a priori adapter sequences.☆22Updated 4 years ago
- Homebrew formulae for bioinformatics software only available for Linux☆27Updated 6 years ago