GENE-SWitCH project RNA-Seq analysis pipeline
☆29Feb 19, 2025Updated last year
Alternatives and similar repositories for analysis-TAGADA
Users that are interested in analysis-TAGADA are comparing it to the libraries listed below
Sorting:
- Merge transcriptome read-to-genome alignments into non-redundant transcript models☆20Jan 21, 2026Updated last month
- a toolkit for evaluation of the lenght of k-mer in a given genome dataset for alignment-free phylogenimic analysis.☆14Nov 21, 2024Updated last year
- TransposonPSI involves a PSI-blast search of a protein or nucleotide sequence against a set of profiles of proteins corresponding to majo…☆14Apr 28, 2020Updated 5 years ago
- ☆16Apr 3, 2023Updated 2 years ago
- HiC-Hiker: A probabilistic model to determine contig orientation in chromosome-length scaffolds with Hi-C☆26Jan 14, 2021Updated 5 years ago
- A complete telomere-to-telomere assembly of sheep: T2T-sheep1.0☆21Nov 2, 2024Updated last year
- Protein hint generation pipeline for gene finding in eukaryotic genomes☆60Oct 27, 2023Updated 2 years ago
- ☆16Dec 25, 2024Updated last year
- ☆15Jan 19, 2022Updated 4 years ago
- ☆29Feb 5, 2026Updated last month
- Simple tools for working with Hi-C data☆18Dec 19, 2018Updated 7 years ago
- a tool to evaluate long-read error correction mainly with PacBio High-Fidelity Reads (HiFi reads).☆21Dec 5, 2023Updated 2 years ago
- ☆36Feb 22, 2023Updated 3 years ago
- Portable solution to generate genome alignment chains using lastz☆60Dec 20, 2025Updated 2 months ago
- The tools are used for displaying hic signal of genome☆24Jan 4, 2021Updated 5 years ago
- ☆33Mar 19, 2025Updated 11 months ago
- This is the standalone version of the EviAnn pipeline☆139Feb 5, 2026Updated 3 weeks ago
- Tool for decomposition centromeric assemblies and long reads into monomers☆37Sep 17, 2022Updated 3 years ago
- A genome assembly assessment pipeline.☆37Nov 20, 2023Updated 2 years ago
- 3DGB is a workflow to build 3D models of genomes from HiC data☆13Jan 26, 2026Updated last month
- Workflow and script for converting genomic coordinates using MUMmer output and CrossMap☆12Sep 1, 2018Updated 7 years ago
- Hi-C data processing pipeline☆38Feb 27, 2024Updated 2 years ago
- A pipeline for genomic variant detection with genome assemblies at population scale☆36Jun 3, 2025Updated 9 months ago
- A filter algorithm with program to filter an alignment or mapping file☆12May 15, 2025Updated 9 months ago
- a precise pangenome browser combining linear and graph-based pan-genome☆13Jul 16, 2024Updated last year
- A new algorithm for scaffolding☆10Sep 18, 2018Updated 7 years ago
- Genome annotation pre-publication results☆25Updated this week
- Joint normalization of multiple Hi-C matrices, visualization and detection of differential chromatin interactions, supporting covariates.☆10Apr 22, 2022Updated 3 years ago
- A scalable variant calling and benchmarking framework supporting both short and long reads.☆14Sep 28, 2025Updated 5 months ago
- Module and script to remove contamination in assembled genomes before submission to ncbi☆14Jul 28, 2025Updated 7 months ago
- Infer metadata for your downstream analysis straight from your RNA-Seq data☆15Nov 20, 2024Updated last year
- Rapid analysis and visualisation for bulk RNA-seq, psuedo-bulk RNA-seq, GeoMx and Proteomic datasets.☆31Sep 17, 2024Updated last year
- ☆27Aug 29, 2025Updated 6 months ago
- Fast in-silico normalization algorithm for NGS data☆23Nov 1, 2021Updated 4 years ago
- Pipeline to identify isoforms from full-length cDNA sequencing data☆26Oct 2, 2025Updated 5 months ago
- Large genome reassembly based on Hi-C data, continuation of GRAAL☆43Mar 20, 2024Updated last year
- fastest GTF/GFF-to-BED converter chilling around☆32Jan 20, 2026Updated last month
- GeneMark-ETP: gene finding in eukaryotic genomes supported by transcriptome sequencing and protein homology☆28Apr 11, 2025Updated 10 months ago
- 🚀 LiftOn: Accurate annotation mapping for GFF/GTF across assemblies☆122Feb 24, 2026Updated last week