FAANG / analysis-TAGADA
GENE-SWitCH project RNA-Seq analysis pipeline
☆26Updated last month
Alternatives and similar repositories for analysis-TAGADA:
Users that are interested in analysis-TAGADA are comparing it to the libraries listed below
- Error correction of ONT transcript reads☆59Updated last year
- A Nextflow workflow to generate lift over files for any pair of genomes☆61Updated last month
- De novo annotation of young retrotransposons☆48Updated 2 years ago
- read and analyse RepeatMasker output☆24Updated last year
- Calculate GC% and GC deviation for circular genomes☆17Updated 4 years ago
- Identify and annotate TE-mediated insertions in long-read sequence data☆41Updated last year
- Code for phasing SVs with SNPs☆52Updated 4 years ago
- PhyloAcc a software to detect the changes of conservation of a genomic region☆30Updated 5 months ago
- ☆26Updated 2 weeks ago
- Analysis of TE contribution to features (transcripts or simple features). Includes utils to test enrichment.☆26Updated 5 years ago
- Computational Analysis of Gene Expression Evolution☆39Updated this week
- Pipeline to identify isoforms from full-length cDNA sequencing data☆24Updated 10 months ago
- Copy number variant caller and depth visualization utility for PacBio HiFi reads☆40Updated 5 months ago
- Transposable Elements MOvement detection using LOng reads☆21Updated 3 months ago
- A pipeline to detect chimeric transcripts derived from genes and transposable elements.☆23Updated 8 months ago
- Drosophila transposable element canonical sequences☆28Updated 2 years ago
- python plotly Circos from VCF☆33Updated 9 months ago
- A pipeline for isoseq☆23Updated 6 years ago
- Algorithm to detect germline and de novo transposon insertions☆27Updated 11 months ago
- Evolutionary Transcriptomics with R☆42Updated last week
- ENCODE long read RNA-seq pipeline☆45Updated 2 years ago
- EM based transcript abundance from nanopore reads mapped to a transcriptome with minimap2☆59Updated 5 months ago
- ExOrthist: a pipeline to extract exon orthologies at any evolutionary distance.☆22Updated 3 months ago
- Summarise and plot data from long-read ONT (direct RNA/cDNA) BAM files☆13Updated 11 months ago
- An R package to identify and classify duplicated genes from whole-genome protein sequence data☆23Updated last week
- ☆17Updated 2 years ago
- perSVade: personalized Structural Variation detection☆38Updated 3 weeks ago
- Long-read Isoform Quantification and Analysis☆39Updated 2 months ago
- A shiny application to visualize MCscan result☆35Updated 2 years ago
- TELR is a fast non-reference transposable element detector from long read sequencing data.☆33Updated last year