koszullab / instaGRAAL
Large genome reassembly based on Hi-C data, continuation of GRAAL
☆38Updated 6 months ago
Related projects: ⓘ
- Show pangenome graphs in an easy way☆52Updated 2 years ago
- A python script for finding telomeric repeats (TTAGGG/CCCTAA) in FASTA files☆31Updated 2 years ago
- A tool for the recovery of unassembled telomeres from soft-clipped read alignments.☆35Updated 7 months ago
- TSEBRA: Transcript Selector for BRAKER☆46Updated 3 months ago
- TGS scaffolding☆45Updated 2 years ago
- Splitting of sequence reads by internal adapter sequence search☆48Updated last year
- 🚀 LiftOn: Accurate annotation mapping for GFF/GTF across assemblies☆57Updated this week
- Identification of transposable element families from pangenome polymorphisms☆38Updated last month
- ☆41Updated 7 years ago
- ☆56Updated 2 months ago
- Panacus is a tool for computing statistics for GFA-formatted pangenome graphs☆80Updated 3 weeks ago
- A fast tool for detecting and decomposing segmental duplications in genome assemblies☆41Updated 7 months ago
- dnaPipeTE (for de-novo assembly & annotation Pipeline for Transposable Elements), is a pipeline designed to find, annotate and quantify T…☆47Updated last year
- Pipeline to convert a haploid assembly into diploid☆89Updated 3 months ago
- Predict 5mC in PacBio HiFi reads☆30Updated 11 months ago
- ☆77Updated 4 years ago
- Detecting multi-genome synteny using minimizer graph mapping☆65Updated this week
- A list of software for pangenomics☆73Updated 2 weeks ago
- ☆51Updated this week
- A tool for evaluate long-read de novo assembly results☆40Updated 3 weeks ago
- use long sequenced reads to close gaps in assemblies☆35Updated 6 years ago
- A organelle de novo genome assembly toolkit☆30Updated 3 months ago
- MCHelper: An automatic tool to curate transposable element libraries☆27Updated 2 months ago
- High-precision TE Annotator☆47Updated 2 weeks ago
- ☆45Updated this week
- finshingTool☆53Updated 7 years ago
- MarginPolish: Graph based assembly polishing☆45Updated 3 years ago
- Simple pileup-based variant caller☆79Updated 5 months ago
- Gapless provides combined scaffolding, gap-closing and assembly correction with long reads☆32Updated last year