Alternatives and similar repositories for instaGRAAL:

Users that are interested in instaGRAAL are comparing it to the libraries listed below

• shingocat / lrscaf
  TGS scaffolding
  ☆46Updated 3 years ago
• JanaSperschneider / FindTelomeres
  A python script for finding telomeric repeats (TTAGGG/CCCTAA) in FASTA files
  ☆33Updated 2 years ago
• mapleforest / HaploMerger2
  ☆43Updated 8 years ago
• bcgsc / ntSynt
  Detecting multi-genome synteny using minimizer graph mapping
  ☆76Updated 3 months ago
• piosierra / pantera
  Identification of transposable element families from pangenome polymorphisms
  ☆45Updated last month
• TF-Chan-Lab / panGraphViewer
  Show pangenome graphs in an easy way
  ☆55Updated 2 years ago
• daewoooo / SVbyEye
  ☆87Updated last month
• 0xTCG / biser
  A fast tool for detecting and decomposing segmental duplications in genome assemblies
  ☆48Updated last year
• kjenike / panagram
  ☆61Updated last month
• Gaius-Augustus / TSEBRA
  TSEBRA: Transcript Selector for BRAKER
  ☆47Updated 5 months ago
• c-zhou / oatk
  A organelle de novo genome assembly toolkit
  ☆59Updated 2 months ago
• CAFS-bioinformatics / LR_Gapcloser
  use long sequenced reads to close gaps in assemblies
  ☆37Updated 6 years ago
• ChongLab / Inspector
  A tool for evaluate long-read de novo assembly results
  ☆44Updated 7 months ago
• GonzalezLab / MCHelper
  MCHelper: An automatic tool to curate transposable element libraries
  ☆36Updated 2 weeks ago
• clemgoub / dnaPipeTE
  dnaPipeTE (for de-novo assembly & annotation Pipeline for Transposable Elements), is a pipeline designed to find, annotate and quantify T…
  ☆55Updated 2 years ago
• shilpagarg / DipAsm
  ☆76Updated 4 years ago
• Adamtaranto / teloclip
  A tool for the recovery of unassembled telomeres from soft-clipped read alignments.
  ☆36Updated last week
• ArimaGenomics / mapping_pipeline
  Mapping pipeline for data generated using Arima-HiC
  ☆76Updated 11 months ago
• PacificBiosciences / jasmine
  Call select base modifications in PacBio HiFi reads
  ☆6Updated 2 months ago
• dwinter / pafr
  Read, manipulate and visualize 'Pairwise mApping Format' data in R
  ☆72Updated 3 years ago
• marschall-lab / panacus
  Panacus is a tool for computing statistics for GFA-formatted pangenome graphs
  ☆100Updated last month
• nanoporetech / duplex-tools
  Splitting of sequence reads by internal adapter sequence search
  ☆50Updated last year
• obenno / ShinySyn
  A shiny application to visualize MCscan result
  ☆36Updated 2 years ago
• ablab / TandemTools
  Tool for assessing/improving assembly quality in extra-long tandem repeats
  ☆46Updated 4 years ago
• aubombarely / Organelle_PBA
  A software to assemble chloroplast and mitochodrial genomes using PacBio data
  ☆38Updated 4 years ago
• baozg / phased-assembly-check
  ☆29Updated 3 months ago
• kakitone / finishingTool
  finshingTool
  ☆55Updated 8 years ago
• Gabaldonlab / perSVade
  perSVade: personalized Structural Variation detection
  ☆39Updated last month
• SAMtoBAM / MUMandCo
  MUM&Co is a simple bash script that uses Whole Genome Alignment information provided by MUMmer (only v4) to detect Structural Variation
  ☆66Updated 3 weeks ago
• arangrhie / merfin
  Evaluate variant calls and its combination with k-mer multiplicity
  ☆66Updated 2 years ago