koszullab / instaGRAALLinks
Large genome reassembly based on Hi-C data, continuation of GRAAL
☆41Updated last year
Alternatives and similar repositories for instaGRAAL
Users that are interested in instaGRAAL are comparing it to the libraries listed below
Sorting:
- Detecting multi-genome synteny using minimizer graph mapping☆78Updated last month
- TSEBRA: Transcript Selector for BRAKER☆47Updated 6 months ago
- TGS scaffolding☆46Updated 3 years ago
- Identification of transposable element families from pangenome polymorphisms☆45Updated this week
- Evaluate variant calls and its combination with k-mer multiplicity☆66Updated 2 years ago
- A tool for evaluate long-read de novo assembly results☆47Updated 9 months ago
- Splitting of sequence reads by internal adapter sequence search☆51Updated 2 years ago
- Panacus is a tool for computing statistics for GFA-formatted pangenome graphs☆107Updated last week
- ☆62Updated last week
- Show pangenome graphs in an easy way☆56Updated 2 years ago
- ☆76Updated 4 years ago
- A python script for finding telomeric repeats (TTAGGG/CCCTAA) in FASTA files☆34Updated 3 years ago
- A tool for the recovery of unassembled telomeres from soft-clipped read alignments.☆37Updated last month
- ☆44Updated 8 years ago
- Call select base modifications in PacBio HiFi reads☆7Updated 4 months ago
- A organelle de novo genome assembly toolkit☆59Updated 3 months ago
- Tool for assessing/improving assembly quality in extra-long tandem repeats☆46Updated 4 years ago
- Pipeline to convert a haploid assembly into diploid☆100Updated 4 months ago
- A fast tool for detecting and decomposing segmental duplications in genome assemblies☆48Updated last year
- Scripts to estimate genome size and coverage from kmer distribution generated by jellyfish☆56Updated 2 years ago
- A Nextflow pipeline for evaluating assembly quality☆34Updated last week
- A program for assessing the T2T genome continuity☆75Updated last month
- finshingTool☆55Updated 8 years ago
- VACmap: a long-read aligner specifically designed for complex structural variation discovery☆35Updated this week
- Read, manipulate and visualize 'Pairwise mApping Format' data in R☆74Updated 4 years ago
- PacBio BAM toolkit☆43Updated 3 months ago
- Mumemto: multi-MUM and MEM finding across pangenomes☆83Updated last week
- dnaPipeTE (for de-novo assembly & annotation Pipeline for Transposable Elements), is a pipeline designed to find, annotate and quantify T…☆56Updated 2 years ago
- DEPRECATED - Workflow for the comprehensive detection and prioritization of variants in human genomes with PacBio HiFi reads☆38Updated last year
- use long sequenced reads to close gaps in assemblies☆37Updated 6 years ago