Large genome reassembly based on Hi-C data, continuation of GRAAL
☆43Mar 20, 2024Updated last year
Alternatives and similar repositories for instaGRAAL
Users that are interested in instaGRAAL are comparing it to the libraries listed below
Sorting:
- A nextflow pipeline for polishing CLR assemblies☆18Feb 3, 2023Updated 3 years ago
- Simple library/pipeline to generate and handle Hi-C data.☆39Feb 13, 2026Updated 2 weeks ago
- Unzip assembly graphs with Hi-C data and/or long reads.☆27Sep 20, 2024Updated last year
- Haploidy and Size Completeness Estimation☆14Apr 11, 2024Updated last year
- HiC-Hiker: A probabilistic model to determine contig orientation in chromosome-length scaffolds with Hi-C☆26Jan 14, 2021Updated 5 years ago
- A Hi-C scaffolding method☆22Dec 22, 2021Updated 4 years ago
- A Generalizable Model for 3D Chromosome Reconstruction Using Graph Convolutional Neural Networks☆18Sep 9, 2021Updated 4 years ago
- Software to assemble contigs/scaffolds into chromosomes using Hi-C data☆28Sep 26, 2024Updated last year
- Novo&Stitch is a genome assembly reconciliation tool based on optical map.☆10Oct 21, 2019Updated 6 years ago
- A tool for recovering synteny blocks from multiple alignment☆32Oct 18, 2021Updated 4 years ago
- Simple tools for working with Hi-C data☆18Dec 19, 2018Updated 7 years ago
- Mapping pipeline for data generated using Arima-HiC☆82May 22, 2024Updated last year
- an ensemble usage of MAFFT-linsi --add on large datasets☆13May 31, 2024Updated last year
- Evaluate variant calls and its combination with k-mer multiplicity☆67Dec 2, 2022Updated 3 years ago
- SALSA: A tool to scaffold long read assemblies with Hi-C data☆188May 17, 2024Updated last year
- This tool is for users to upgrade their metagenomics assemblies using long reads. This includes fixing mis-assemblies and scaffolding/gap…☆13Mar 17, 2016Updated 9 years ago
- (check out instaGRAAL for a faster, updated program!) This program is from Marie-Nelly et al., Nature Communications, 2014 (High-qualit…☆15Nov 22, 2022Updated 3 years ago
- Find, circularise and annotate mitogenome from PacBio assemblies☆191May 11, 2025Updated 9 months ago
- Ploidy agnostic phasing pipeline and algorithm☆49Jan 3, 2024Updated 2 years ago
- Metagenomic binning based on Hi-C data☆28Aug 7, 2025Updated 6 months ago
- ☆15Aug 6, 2018Updated 7 years ago
- A fast tool for hybrid genome assembly of long and short reads☆78Apr 22, 2020Updated 5 years ago
- Minimizer-based assembly scaffolding and mapping using long reads☆47Feb 4, 2026Updated last month
- ☆10Jun 13, 2020Updated 5 years ago
- ☆78Dec 4, 2019Updated 6 years ago
- misFinder: Identify mis-assemblies in an unbiased manner using reference and paired-end reads☆10Oct 17, 2015Updated 10 years ago
- Genome assembly scaffolding using information from paired-end/mate-pair libraries, long reads, and synteny to closely related species.☆24Dec 6, 2018Updated 7 years ago
- The MARVEL assembler☆80Jul 7, 2023Updated 2 years ago
- A python script for finding telomeric repeats (TTAGGG/CCCTAA) in FASTA files☆37Jun 6, 2022Updated 3 years ago
- software tools for haplotype assembly from sequence data☆229Feb 9, 2025Updated last year
- A single fast and exhaustive tool for summary statistics and simultaneous *fa* (fasta, fastq, gfa [.gz]) genome assembly file manipulatio…☆121Feb 12, 2026Updated 3 weeks ago
- Haplotype-aware genome assembly toolkit☆30Jan 8, 2020Updated 6 years ago
- ☆26Oct 31, 2019Updated 6 years ago
- An accurate and ultra-fast hybrid genome assembler☆87Apr 10, 2024Updated last year
- Simultaneous multi-sample transcript assembler for RNA-seq data☆18Dec 13, 2024Updated last year
- Reduction of Althaps and Duplicate Contigs for Improved Hi-C Scaffolding☆20Mar 3, 2025Updated last year
- BUSCOMP: BUSCO Compiler and Comparison tool☆21Sep 19, 2024Updated last year
- ☆78Jun 12, 2020Updated 5 years ago
- HyPo: Super Fast & Accurate Polisher for Long Read Genome Assemblies☆65Feb 23, 2020Updated 6 years ago