Pipeline to identify isoforms from full-length cDNA sequencing data
☆28Nov 2, 2026Updated this week
Alternatives and similar repositories for Mandalorion
Users that are interested in Mandalorion are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- HiC-Hiker: A probabilistic model to determine contig orientation in chromosome-length scaffolds with Hi-C☆26Jan 14, 2021Updated 5 years ago
- Error correction of long reads☆16Jan 30, 2026Updated 9 months ago
- An integrated computational framework for comprehensive transcriptome analyses with Nanopore direct-RNA sequencing data☆15May 17, 2025Updated last year
- Single-cell Hi-C & RNA analysis☆11Nov 20, 2024Updated last year
- Very simple and configurable all-in-one dotplot program☆14Apr 1, 2023Updated 3 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Pipeline for genome scaffolding by modelling distributions of HiC pairs☆12Dec 7, 2022Updated 3 years ago
- Tool for the Quality Control of Long-Read Defined Transcriptomes☆283Oct 28, 2026Updated last week
- Variant sequence context analysis tool☆10Jul 5, 2024Updated 2 years ago
- Iso-Seq reads simulator for PacBio and ONT full-length isoform sequencing technologies☆16Mar 1, 2022Updated 4 years ago
- Full-Length Alternative Isoform analysis of RNA☆258Updated this week
- A context-based long-read simulator☆16Oct 12, 2026Updated 3 weeks ago
- Long-read Isoform Quantification and Analysis☆41Mar 25, 2025Updated last year
- GENE-SWitCH project RNA-Seq analysis pipeline☆32May 6, 2026Updated 6 months ago
- Gap2Seq is a gap filling and insertion genotyping tool.☆22Aug 12, 2024Updated 2 years ago
- Bare Metal GPUs on DigitalOcean Gradient AI • AdPurpose-built for serious AI teams training foundational models, running large-scale inference, and pushing the boundaries of what's possible.
- FulQuant pipeline to identify and quantify transcript isoforms based on Nanopore long-read data☆10Jul 20, 2022Updated 4 years ago
- HELIANO is a software for detection and classification of Helitron-like elements.☆35Jul 13, 2026Updated 3 months ago
- A gene fusion caller for long-read transcriptome sequencing data.☆23Apr 29, 2024Updated 2 years ago
- Clair3-RNA - a long-read small variant caller for RNA sequencing data☆45Apr 16, 2026Updated 6 months ago
- Paired REad TEXTure Mapper. Converts SAM formatted read pairs into genome contact maps.☆28Updated this week
- ☆31Nov 28, 2024Updated last year
- ☆116Aug 5, 2026Updated 3 months ago
- Protein hint generation pipeline for gene finding in eukaryotic genomes☆63Oct 27, 2023Updated 3 years ago
- R package for visualization and exploratory analysis of Oxford Nanopore direct RNA seq based polyA predictions☆13Jun 25, 2024Updated 2 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Alignment-free genotyper for SNPs and short indels, implemented in Python.☆59Mar 7, 2025Updated last year
- Genome Assembly Validation via Inter-SUNK distances in ONT reads☆16Feb 20, 2023Updated 3 years ago
- End-guided RNA assembler☆15Dec 2, 2025Updated 11 months ago
- Penguin: A Tool for Predicting Pseudouridine Sites in Direct RNA Nanopore Sequencing Data☆15Nov 15, 2021Updated 4 years ago
- ☆23Aug 13, 2026Updated 2 months ago
- Whole genome core alignments from multiple draft genomes☆13Sep 14, 2016Updated 10 years ago
- HAT is a set of tools for calling de novo variants from whole-genome sequencing data.☆24Nov 18, 2025Updated 11 months ago
- RepeatIdentifier☆76Mar 19, 2025Updated last year
- A new simple and efficient software to PCA and Cluster For popolation VCF File☆84Aug 1, 2026Updated 3 months ago
- End-to-end encrypted cloud storage - Proton Drive • AdSpecial offer: 40% Off Yearly / 80% Off First Month. Protect your most important files, photos, and documents from prying eyes.
- A newly designed version of Bamsnap with Long Read Support (LRS) which inspired by bamsnap (https://github.com/parklab/bamsnap)☆14Oct 13, 2026Updated 3 weeks ago
- A k-mer frequency statistics software☆15Nov 19, 2021Updated 4 years ago
- FunctionaL Omics Processing platform☆12Jul 25, 2024Updated 2 years ago
- longcallR is a tool for SNP calling, haplotype phasing, and allele-specific analysis with long-read RNA-seq data.☆98Aug 2, 2026Updated 3 months ago
- Correct mismatches, microindels, and noncanonical splice junctions in long reads that have been mapped to the genome☆73Jan 31, 2024Updated 2 years ago
- assembly evaluation tool☆36May 11, 2022Updated 4 years ago
- Generate pan-gene sets, given a collection of genome assemblies and corresponding gene models.☆23Aug 12, 2026Updated 2 months ago