SchulzLab / ORNALinks
Fast in-silico normalization algorithm for NGS data
☆23Updated 3 years ago
Alternatives and similar repositories for ORNA
Users that are interested in ORNA are comparing it to the libraries listed below
Sorting:
- Workflows for correcting and scaffolding long-read (PacBio, nanopore) genome assemblies using optical mapping and/or Dovetail Hi-C data☆20Updated 5 years ago
- SAMsift: advanced filtering and tagging of SAM/BAM alignments using Python expressions.☆23Updated 2 weeks ago
- Integrated toolkit for analysis and evaluation of annotated genomes☆25Updated 2 months ago
- fastq quality assessment and filtering tool☆18Updated 2 years ago
- A simple tool to fix PacBio fasta/q that was not properly split into subreads☆15Updated 4 years ago
- Improved Phased Assembler☆28Updated 3 years ago
- Population-wide Deletion Calling☆35Updated 5 months ago
- Exact Tandem Repeat Finder (not a TRF replacement)☆49Updated 5 years ago
- ☆15Updated 7 years ago
- SAMStat displays various properties of next-generation sequencing reads stored in SAM/BAM format.☆24Updated 2 years ago
- Identifying repeats in high-throughput sequencing data☆16Updated last year
- transposable element typing pipeline☆19Updated last year
- Population-scale detection of non-reference sequence variants using colored de Bruijn Graphs☆26Updated last year
- Method to optimally select samples for validation and resequencing☆28Updated 4 years ago
- Functions to compare a SV call sets against a truth set.☆30Updated 3 months ago
- MapCaller – An efficient and versatile approach for short-read alignment and variant detection in high-throughput sequenced genomes☆30Updated 4 years ago
- ☆28Updated 2 years ago
- Accurate, Lightweight Clustering of de novo Transcriptomes using Fragment Equivalence Classes☆31Updated last year
- Assembler for raw de novo genome assembly of long uncorrected reads.☆36Updated 5 years ago
- ☆32Updated 2 years ago
- A JBrowse plugin to view multiple alignment format (MAF) files☆26Updated last year
- Tools for merging Tandem Repeat VCF files☆34Updated 5 months ago
- CAMSA: a tool for Comparative Analysis and Merging of Scaffold Assemblies☆24Updated 5 years ago
- Phase reads, assemble haplotypes and detect SVs☆19Updated 4 years ago
- base-accurate DNA sequence alignments using edlib and mashmap2☆32Updated 4 years ago
- A tool for recovering synteny blocks from multiple alignment☆30Updated 3 years ago
- DETONATE: DE novo TranscriptOme rNa-seq Assembly with or without the Truth Evaluation☆13Updated 9 years ago
- URMAP ultra-fast read mapper☆38Updated 5 years ago
- PhyloCSF++ computes PhyloCSF tracks for whole-genome multiple sequence alignments, scores single MSA, annotates CDS features in GFF/GTF f…☆30Updated 3 years ago
- Ultra-efficient mapping-free structural variation genotyper☆19Updated 4 years ago