SchulzLab / ORNALinks
Fast in-silico normalization algorithm for NGS data
☆23Updated 4 years ago
Alternatives and similar repositories for ORNA
Users that are interested in ORNA are comparing it to the libraries listed below
Sorting:
- A simple tool to fix PacBio fasta/q that was not properly split into subreads☆16Updated 4 years ago
- fastq quality assessment and filtering tool☆18Updated 3 years ago
- Annotated Genome Optimization Using Transcriptome Information☆20Updated 5 years ago
- ☆16Updated 8 years ago
- Population-wide Deletion Calling☆35Updated 9 months ago
- Functions to compare a SV call sets against a truth set.☆30Updated 7 months ago
- transposable element typing pipeline☆19Updated last year
- SAMsift: advanced filtering and tagging of SAM/BAM alignments using Python expressions.☆23Updated 4 months ago
- Improved Phased Assembler☆28Updated 3 years ago
- This is the Haplotypo repository☆22Updated last year
- URMAP ultra-fast read mapper☆38Updated 5 years ago
- Identifying repeats in high-throughput sequencing data☆16Updated last year
- MapCaller – An efficient and versatile approach for short-read alignment and variant detection in high-throughput sequenced genomes☆30Updated 4 years ago
- Find Unique genomic Regions☆32Updated last week
- Workflows for correcting and scaffolding long-read (PacBio, nanopore) genome assemblies using optical mapping and/or Dovetail Hi-C data☆20Updated 5 years ago
- Population-scale detection of non-reference sequence variants using colored de Bruijn Graphs☆26Updated last year
- Exact Tandem Repeat Finder (not a TRF replacement)☆51Updated 6 years ago
- Accurate, Lightweight Clustering of de novo Transcriptomes using Fragment Equivalence Classes☆31Updated last year
- Kmer based genotyper for short reads.☆23Updated 4 years ago
- Converting and demultiplexing of PacBio BAM files into gzipped fasta and fastq files.☆39Updated 2 years ago
- Integrated toolkit for analysis and evaluation of annotated genomes☆25Updated 5 months ago
- Pipeline for structural variant image curation and analysis.☆49Updated 4 years ago
- FastRemap, a C++ tool for quickly remapping reads between genome assemblies based on the commonly used CrossMap tool. Link to paper: http…☆26Updated 3 years ago
- DETONATE: DE novo TranscriptOme rNa-seq Assembly with or without the Truth Evaluation☆14Updated 9 years ago
- de Bruijn Graph-based read aligner☆35Updated 7 years ago
- interactive Multi Objective K-mer Analysis☆23Updated 2 years ago
- kASA - k-Mer Analysis of Sequences based on Amino acid-like encoding☆23Updated 2 years ago
- Scaffolding genomes using synthetic long read clouds☆20Updated 9 years ago
- Profile HMM-based hybrid error correction algorithm for long reads☆21Updated 7 years ago
- CAMSA: a tool for Comparative Analysis and Merging of Scaffold Assemblies☆24Updated 5 years ago