Fast in-silico normalization algorithm for NGS data
☆23Nov 1, 2021Updated 4 years ago
Alternatives and similar repositories for ORNA
Users that are interested in ORNA are comparing it to the libraries listed below
Sorting:
- semi-reference-based short read compression☆11Mar 5, 2019Updated 6 years ago
- de Bruijn graph cOrrectiOn from graph aLignment☆11Jul 20, 2020Updated 5 years ago
- Error correction for Illumina RNA-seq reads☆68Jan 4, 2026Updated last month
- Long Approximate Matches-based Split Aligner☆13Apr 6, 2017Updated 8 years ago
- This repo is deprecated. Please use gfatools instead.☆15Aug 17, 2018Updated 7 years ago
- ☆16Jan 5, 2018Updated 8 years ago
- An R package to detect, classify, and visualize genome rearrangements☆15Aug 4, 2020Updated 5 years ago
- de Bruijn Graph REAd mapping Tool☆14Jul 12, 2017Updated 8 years ago
- A fast and efficient short read mapper☆13Nov 7, 2021Updated 4 years ago
- The new version is available at https://github.com/RabbitBio/RabbitQCPlus☆26Jun 20, 2022Updated 3 years ago
- Tool (experimental) to compute layout from overlaps with spectral algorithm☆11Nov 28, 2017Updated 8 years ago
- De novo genome assembler.☆11Jul 30, 2018Updated 7 years ago
- A tool to detect postzygotic single-nucleotide mosaicism from unpaired, trio, or paired samples.☆13Feb 23, 2021Updated 5 years ago
- Simple and quick FastQ and FastA tool for file reading and conversion☆17Jul 11, 2014Updated 11 years ago
- Rcount: simple and flexible RNA-Seq read counting☆12May 19, 2022Updated 3 years ago
- Code for differential splicing comparison paper (Soneson, Matthes, et al.)☆20Jun 23, 2016Updated 9 years ago
- Improved multi-sample transcript abundance estimates using adaptive priors☆20Oct 29, 2018Updated 7 years ago
- a toolset for efficient analysis of 10X Genomics linked read data sets, in particular for de novo assembly☆15Nov 27, 2019Updated 6 years ago
- Long read to reference genome mapping tool☆13Mar 14, 2024Updated last year
- AlignerBoost is a generalized software toolkit for boosting Next-Gen sequencing mapping precision using a Bayesian based mapping quality …☆11Mar 1, 2022Updated 3 years ago
- A deletion finder through re-aligning the whole soft-clipping read☆12Jul 2, 2016Updated 9 years ago
- VCF files of SVs using long-read sequencing (LRS).☆22Dec 17, 2021Updated 4 years ago
- Gordon's Text utils Library☆10Apr 11, 2022Updated 3 years ago
- Finding putative exons and constructing splicegraphs using Trans-ABySS contigs☆11Nov 8, 2018Updated 7 years ago
- Scaffolding genomes using synthetic long read clouds☆20Oct 11, 2016Updated 9 years ago
- Lightweight resources assembly algorithm☆19May 17, 2017Updated 8 years ago
- DeeNA Zip (SAM/BAM compression tool)☆13May 25, 2019Updated 6 years ago
- ☆13Jan 8, 2020Updated 6 years ago
- nimble aligner that will map your reads to the references on a laptop☆11Jun 29, 2017Updated 8 years ago
- Scallop is a reference-based transcriptome assembler for RNA-seq☆92Apr 30, 2021Updated 4 years ago
- RNF framework for NGS: simulation of reads, evaluation of mappers, conversion of RNF-compliant data.☆14Nov 10, 2025Updated 3 months ago
- WALT is a read mapping program for bisulfite sequencing DNA methylation studies.☆17Aug 23, 2022Updated 3 years ago
- ClaMSA (Classify Multiple Sequence Alignments).☆13Nov 21, 2024Updated last year
- A fast constructor of the compressed de Bruijn graph from many genomes☆42Nov 27, 2025Updated 3 months ago
- Tools for bam file processing☆55Apr 20, 2015Updated 10 years ago
- Next generation sequencing (NGS/HTS) tools.☆19Jan 25, 2024Updated 2 years ago
- ☆15Apr 6, 2016Updated 9 years ago
- Error correction and variant calling algorithm for nanopore sequencing☆26Apr 23, 2016Updated 9 years ago
- Squeakr: An Exact and Approximate k -mer Counting System☆86Feb 23, 2025Updated last year