soybase / crossmap-workflowLinks
Workflow and script for converting genomic coordinates using MUMmer output and CrossMap
☆11Updated 7 years ago
Alternatives and similar repositories for crossmap-workflow
Users that are interested in crossmap-workflow are comparing it to the libraries listed below
Sorting:
- BLINK: A Package for Next Level of Genome Wide Association Studies with Both Individuals and Markers in Millions☆38Updated 6 months ago
- Scripts and other material for the assembly and analysis of ratite genomes.☆26Updated 2 years ago
- A scalable variant calling and benchmarking framework supporting both short and long reads.☆14Updated last week
- ☆42Updated last year
- Useful bioinformatic scripts☆58Updated 10 months ago
- Application of pan-genome for population☆110Updated 11 months ago
- ☆32Updated this week
- PhyloAcc a software to detect the changes of conservation of a genomic region☆33Updated 5 months ago
- Genome scaffolding based on HiC data in heterozygous and high ploidy genomes☆60Updated 9 months ago
- BamDeal: a comprehensive toolkit for bam manipulation☆54Updated 2 years ago
- Tool set for processing fasta/fastq/table formated data. Usually they are perl scripts.☆56Updated last month
- VCF2Dis: an ultra-fast and efficient tool to calculate pairwise genetic distance and construct population phylogeny from VCF files☆48Updated last month
- A collection of scripts for working with Hi-C data, Juicebox, and other genomic file formats☆69Updated 4 years ago
- ☆74Updated 5 years ago
- ☆15Updated 3 years ago
- Bulked-Segregant Analysis using vcf file with or without parents☆31Updated 9 months ago
- DNA序列比对结果 可视化展示工具☆55Updated 2 years ago
- MEGAnE☆33Updated 2 years ago
- Project description and analytic scripts for cis/trans regulation of fiber development in G. hirsutum☆16Updated last year
- Here, we sequence and de novo assemble chromosome-scale genomes of nine wild species and two cultivated accessions of tomato and construc…☆61Updated last year
- De novo annotation of young retrotransposons☆48Updated 3 years ago
- Pan-genome Construction and Population Structure Variation Calling pipeline☆42Updated last year
- IsoSeq3 - Scalable De Novo Isoform Discovery from Single-Molecule PacBio Reads☆18Updated 7 years ago
- A pipeline to de novo assemble the stLFR reads using Supernova Assembler☆20Updated 2 years ago
- Same species annotation lift over pipeline.☆98Updated 2 years ago
- A machine learning-based genotyping tool for structural variation in short reads☆24Updated 3 weeks ago
- Scripts and procedures for detecting positively selected genes and codons in primates☆21Updated 4 years ago
- A pipeline for isoseq☆23Updated 7 years ago
- Genome annotation pipeline☆62Updated last year
- QTL-seq pipeline to identify causative mutations responsible for a phenotype☆57Updated 8 months ago