Workflow and script for converting genomic coordinates using MUMmer output and CrossMap
☆12Sep 1, 2018Updated 7 years ago
Alternatives and similar repositories for crossmap-workflow
Users that are interested in crossmap-workflow are comparing it to the libraries listed below
Sorting:
- ☆14May 22, 2025Updated 9 months ago
- An Efficient Multiple-Testing Adjustment for eQTL Studies that Accounts for Linkage Disequilibrium between Variants☆11Oct 24, 2019Updated 6 years ago
- Genotyping of segregating mobile elements insertions☆19Jul 29, 2021Updated 4 years ago
- Same species annotation lift over pipeline.☆97Jul 21, 2023Updated 2 years ago
- GENE-SWitCH project RNA-Seq analysis pipeline☆29Feb 19, 2025Updated last year
- The R tool associated with 3VmrMLM, a comprehensive GWAS method for identifying QTNs, QTN-by-environment interactions, and QTN-by-QTN int…☆34Dec 29, 2025Updated 2 months ago
- A Plant Presence/absence Variants Scanner and Pan-genome Construction Pipeline☆28May 24, 2021Updated 4 years ago
- A de novo prediction tool of chromatin accessible regions for plant genomes☆10Aug 12, 2021Updated 4 years ago
- Transposable element polymorphism identification☆34Jul 22, 2020Updated 5 years ago
- A fast and accurate RNA secondary structure, end-to-end approach prediction method.☆12Jan 2, 2025Updated last year
- Detecting Archaic Introgression from Population Genetic Data with S*☆10Jan 28, 2026Updated last month
- Correlation-based approach for identification of endocrine interactions☆13Jan 18, 2022Updated 4 years ago
- Code for RNA-seq gene coexpression analysis☆10Dec 23, 2021Updated 4 years ago
- ☆13Nov 13, 2023Updated 2 years ago
- A tool to infer TF regulators for gene modules.☆10May 11, 2021Updated 4 years ago
- This toolkit deals with GEnomic sequence and genome structure ANnotation files between inbreeding lines and species.☆45Mar 2, 2023Updated 2 years ago
- Trend And PeAkS (TAPAS) analysis of temporal series (e.g. paleoecological records) to assess long-term trend and detect events (and event…☆12Aug 19, 2024Updated last year
- xGAP is an efficient, modular, extensible and fault-tolerant pipeline for massively parallelized genomic analysis/variant discovery from …☆11Oct 21, 2020Updated 5 years ago
- A tool for phasing and imputing haplotypes in 10k+ low coverage sequencing samples☆10Nov 20, 2020Updated 5 years ago
- Annotation of cryptic transposon variants using Hidden Markov Models to detect conserved terminal features.☆10Jan 27, 2026Updated last month
- ☆10Sep 11, 2020Updated 5 years ago
- A tool for detecting CNVs from WGS data☆11Jul 9, 2020Updated 5 years ago
- A scalable variant calling and benchmarking framework supporting both short and long reads.☆14Sep 28, 2025Updated 5 months ago
- ☆15Jun 3, 2018Updated 7 years ago
- Obsolete!! Begin to turn to PrimerServer2☆10Jul 22, 2019Updated 6 years ago
- Identify one or more connected, focally amplified genomic regions to elucidate the architecture of focal amplifications such as ecDNA.☆10Feb 6, 2026Updated 3 weeks ago
- Draw the Gene structure based on the GFF and gene's ID☆10Jun 13, 2020Updated 5 years ago
- Multisample Variant Format ToolKit☆10Oct 12, 2021Updated 4 years ago
- ☆11Oct 28, 2025Updated 4 months ago
- scripts used for processing and analyzing data in the article.☆13Oct 31, 2019Updated 6 years ago
- convert a blast output to a bed file☆12Jun 19, 2015Updated 10 years ago
- Source code for "Nucleosome plasticity is a critical element of chromatin liquid–liquid phase separation and multivalent nucleosome inter…☆13Jun 17, 2022Updated 3 years ago
- Manipulate genomic features and validate the syntax and reference sequence of your GFF3 files☆10Dec 26, 2022Updated 3 years ago
- A port of gae-search using django-nonrel☆16Mar 13, 2012Updated 13 years ago
- Non-parametric structural variant genotyper☆15Nov 18, 2021Updated 4 years ago
- hot_scan is a free software to detect genomic regions unusually rich (hotspot) in a given pattern via scan statistics☆10Oct 17, 2013Updated 12 years ago
- genotyping by Mapping-free ALternate-allele detection of known VAriants☆10Mar 6, 2023Updated 2 years ago
- Machine learning workshop materials☆15Nov 19, 2024Updated last year
- a pipeline for quantification of circular RNA.☆14May 7, 2017Updated 8 years ago