nanoporetech / Pore-C-SnakemakeLinks
☆33Updated 2 years ago
Alternatives and similar repositories for Pore-C-Snakemake
Users that are interested in Pore-C-Snakemake are comparing it to the libraries listed below
Sorting:
- ☆41Updated 4 months ago
- Long-read Isoform Quantification and Analysis☆38Updated 3 months ago
- Pore-C support☆53Updated 2 years ago
- An R package for estimating poly(A)-tail lengths in Oxford Nanopore RNA and DNA reads.☆53Updated 8 months ago
- Pipeline to identify isoforms from full-length cDNA sequencing data☆25Updated last month
- ☆36Updated 2 years ago
- A pipeline to detect chimeric transcripts derived from genes and transposable elements.☆30Updated last month
- python plotly Circos from VCF☆38Updated last year
- Error correction of ONT transcript reads☆58Updated last year
- Set of tools to manipulate and visualize modified base bam files☆56Updated 2 years ago
- EM based transcript abundance from nanopore reads mapped to a transcriptome with minimap2☆61Updated 8 months ago
- LongcallR is a SNP caller for single molecule long-read RNA-seq data☆62Updated 2 weeks ago
- Simple library/pipeline to generate and handle Hi-C data.☆37Updated 7 months ago
- SQANTI2 is now replaced by SQANTI3. Please go to: https://github.com/ConesaLab/SQANTI3☆38Updated 5 years ago
- fusion transcript detection using long reads, leveraging ctat-minimap2 and FusionInspector☆22Updated 4 months ago
- Concurrent identification of m6A and m5C modifications in individual molecules from nanopore sequencing☆40Updated 11 months ago
- An m6A-aware basecalling model to detect m6A modifications at single nucleotide resolution in individual reads (Cruciani, Delgado-Tejedo…☆16Updated 4 months ago
- DNA multiple sequence aligner, official version from Penn State's Miller Lab☆34Updated 6 years ago
- Allo: a multi-mapped read rescue strategy for gene regulatory analyses☆24Updated 9 months ago
- processing 10x genomics reads☆26Updated 5 years ago
- Summarise and plot data from long-read ONT (direct RNA/cDNA) BAM files☆14Updated last year
- Identify and annotate TE-mediated insertions in long-read sequence data☆42Updated last week
- ☆37Updated 5 years ago
- A Snakemake workflow for calling Fiber-seq Inferred Regulatory Elements (FIREs) on single molecules.☆20Updated last week
- Methylation Phasing for Nanopore Sequencing☆48Updated 2 years ago
- A Nextflow workflow to generate lift over files for any pair of genomes☆67Updated last week
- SpecHLA reconstructs entire diploid sequences of HLA genes and infers LOH events. It supports HLA-A, -B, -C, -DPA1, -DPB1, -DQA1, -DQB1, …☆46Updated 2 months ago
- ☆23Updated 2 years ago
- Genome annotation with PacBio Iso-Seq. Takes raw subreads as input, generate Full Length Non Chemiric (FLNC) sequences and produce a bed …☆43Updated 3 weeks ago
- A Library to Explore Chromatin Interaction Patterns for Topologically Associating Domains☆43Updated 2 years ago