alejandrogzi / gxf2bedView external linksLinks
fastest GTF/GFF-to-BED converter chilling around
☆31Jan 20, 2026Updated 3 weeks ago
Alternatives and similar repositories for gxf2bed
Users that are interested in gxf2bed are comparing it to the libraries listed below
Sorting:
- base-level dotplots from PAF alignments☆31Sep 18, 2025Updated 4 months ago
- a lexicographically-based GTF/GFF sorter☆38Apr 27, 2025Updated 9 months ago
- convert variation graph alignments to coverage maps over nodes☆27Jan 21, 2026Updated 3 weeks ago
- Identifying large scale inversions between two genomes by mapping genome 1's unique kmers onto genome 2.☆10Jun 6, 2025Updated 8 months ago
- Pipeline for eukaryotic genome annotation based on external evidences☆13Feb 23, 2023Updated 2 years ago
- This is a basic repository with all the scripts necessary to reconstruct the data analysis from our work on the 200 Genomes☆12Aug 31, 2018Updated 7 years ago
- ☆13May 16, 2016Updated 9 years ago
- ☆10Dec 28, 2023Updated 2 years ago
- Python Scripts for Bioinformatics☆15Apr 24, 2024Updated last year
- ☆10Feb 25, 2024Updated last year
- GenomeTools: Scripts and Classes for Working with Genomic Data☆12Jun 7, 2018Updated 7 years ago
- convert CHAIN format to PAF format☆15Dec 17, 2024Updated last year
- Iterative error correction of long reads☆13Dec 9, 2022Updated 3 years ago
- ☆17Jan 20, 2026Updated 3 weeks ago
- Code repository for the T2T-Y paper☆24Jul 11, 2023Updated 2 years ago
- Set of script for the paper on the cattle graph genome☆13Jan 10, 2023Updated 3 years ago
- Cookiecutter for snakemake slurm profile☆15Jul 22, 2023Updated 2 years ago
- A nextflow pipeline for analysing expression and splicing in RNA seq data from rare disease patient☆18Nov 14, 2025Updated 3 months ago
- This is something I have decided to do to make something good come out of the current covid situation. Here I will put the publicly avail…☆12Sep 6, 2021Updated 4 years ago
- Materials for EN.601.449/649 Computational Genomics: Applied Comparative Genomics☆29Sep 9, 2024Updated last year
- Scripts for Hill et al. (2022) doi:10.1093/molbev/msac085 🟣☆11Apr 28, 2023Updated 2 years ago
- Structural variant (SV) analysis tools☆40Jul 1, 2024Updated last year
- ☆17Nov 26, 2023Updated 2 years ago
- ClaMSA (Classify Multiple Sequence Alignments).☆13Nov 21, 2024Updated last year
- Automated Detection and Qualification of Differential Methylation☆16Nov 21, 2023Updated 2 years ago
- Very simple and configurable all-in-one dotplot program☆14Apr 1, 2023Updated 2 years ago
- scripts for the project of seven thaliana genomes assembly☆42May 22, 2021Updated 4 years ago
- Collection of utilities for working with PacBio-based assemblies☆13Apr 2, 2023Updated 2 years ago
- A wrapper for calling small variants from human germline high-coverage single-sample Illumina data☆14Jul 21, 2019Updated 6 years ago
- PAF (pairwise alignment format) validator based on extended CIGAR strings☆15Aug 10, 2025Updated 6 months ago
- A plant organellar Graphical Fragment Assembly toolkit☆16Sep 10, 2025Updated 5 months ago
- Merge transcriptome read-to-genome alignments into non-redundant transcript models☆20Jan 21, 2026Updated 3 weeks ago
- ☆16Jan 5, 2018Updated 8 years ago
- VACmap: a long-read aligner specifically designed for complex structural variation discovery☆62Jan 29, 2026Updated 2 weeks ago
- Lint Nextflow pipelines in Python.☆11Jan 23, 2025Updated last year
- Bioinformatics scripts for genome analysis☆17Oct 26, 2022Updated 3 years ago
- Detect and phase minor SNVs from long-read sequencing data☆14Dec 28, 2021Updated 4 years ago
- A Nextflow pipeline for running synteny analysis.☆16Jun 17, 2025Updated 7 months ago
- visualization of phylogenetic output files☆14Oct 23, 2023Updated 2 years ago