zavolanlab / htsinferLinks
Infer metadata for your downstream analysis straight from your RNA-Seq data
☆15Updated 8 months ago
Alternatives and similar repositories for htsinfer
Users that are interested in htsinfer are comparing it to the libraries listed below
Sorting:
- Callable Cancer Loci - assessment of sequencing coverage for actionable and pathogenic loci in cancer☆21Updated 4 years ago
- v2.x of the microassembly based somatic variant caller☆24Updated 3 weeks ago
- CLI to automate Nextflow pipeline testing☆12Updated last month
- Unfazed by genomic variant phasing☆27Updated last year
- This repository contains the code to run the ASCETS arm-level copy number events caller for targeted sequencing data. ASCETS produces arm…☆16Updated last year
- Ximmer is a system for CNV calling on exome and targeted genomic sequencing☆19Updated 5 months ago
- A set of tools to annotate VCF files with expression and readcount data☆29Updated 5 months ago
- Improved multi-sample transcript abundance estimates using adaptive priors☆20Updated 6 years ago
- Converts 'MultiQC' Reports into Tidy Data Frames☆20Updated last year
- Filter and prioritize fusion calls☆20Updated 10 months ago
- R Interface to the NCBI SRA metadata☆23Updated 6 years ago
- A program for fast and accurate genome-guided transcripts reconstruction and quantification from RNA-seq (Supporting Pacbio single-end)☆23Updated 4 years ago
- ☆21Updated 3 weeks ago
- iAnnotateSV is a Python library and command-line software toolkit to annotate and visualize structural variants detected from Next Genera…☆16Updated 4 months ago
- A bioinformatics best-practice analysis pipeline for the analysis of shallow whole genome sequencing (sWGS) data for the identification o…☆13Updated 2 weeks ago
- Allele-Specific Quantification of Structural Variations in Cancer Genomes☆18Updated 6 years ago
- ☆22Updated last month
- interactive plots for differential expression analysis☆32Updated last month
- Slinker offers a succinct and complementary method to visualise RNA-Seq data through superTranscripts.☆19Updated 3 years ago
- End-guided RNA assembler☆15Updated 3 weeks ago
- Population-based detection of structural variation from High-Throughput Sequencing.☆31Updated 3 years ago
- a Shiny/R application to view and annotate copy number variations☆28Updated 2 years ago
- R package to organise and standardise your genomic variant calls obtained with different callers.☆11Updated 6 years ago
- Summarize and filter read alignments from multiple sequencing samples (taken as sorted BAM files)☆17Updated last week
- R package to quickly obtain count vectors from indexed bam files☆15Updated last month
- Differential expression and allelic analysis, nonparametric statistics☆29Updated 7 months ago
- DRAGEN Tumor/Normal workflow post-processing☆22Updated last year
- Single-header C++ library for fast/low-memory VCF (Variant Call Format) parsing.☆17Updated last month
- ☆12Updated 2 months ago
- A small R package to make sequencing read coverage plots in R.☆39Updated 3 years ago