bioinfomaticsCSU / BOSSLinks
A new algorithm for scaffolding
☆10Updated 6 years ago
Alternatives and similar repositories for BOSS
Users that are interested in BOSS are comparing it to the libraries listed below
Sorting:
- somatic SV calling on matched tumor-normal co-assembly graphs☆22Updated last year
- Programs implementing the trio-binning genome assembly method☆19Updated last year
- use variant nesting information to flter overlapping sites from vg deconstruct output☆26Updated 2 months ago
- building a human pangenome from the HPRCy1v2 genbank accessioned assemblies☆14Updated 2 years ago
- ☆36Updated 2 weeks ago
- Tool for globally phasing diploid assembly graphs with orthogonal data☆40Updated 8 months ago
- GFAffix identifies walk-preserving shared affixes in variation graphs and collapses them into a non-redundant graph structure.☆37Updated 2 months ago
- R package and wrapper functions for identifying serial structural variations from genome assemblies☆27Updated 10 months ago
- CAMSA: a tool for Comparative Analysis and Merging of Scaffold Assemblies☆24Updated 5 years ago
- TELR is a fast non-reference transposable element detector from long read sequencing data.☆33Updated 2 years ago
- Graphical interactive tool for the visualization of sequence graphs in GFA format.☆70Updated 6 years ago
- Kmer Analysis of Pileups for Genotyping☆32Updated this week
- A tool for the recovery of unassembled telomeres from soft-clipped read alignments.☆41Updated 4 months ago
- MarginPolish: Graph based assembly polishing☆46Updated 4 years ago
- ☆48Updated last year
- ☆21Updated 5 months ago
- Gapless provides combined scaffolding, gap-closing and assembly correction with long reads☆35Updated 2 years ago
- Pipeline to detect PAVs (presence/absence variations) in genome comparison using whole genome alignment.☆29Updated 7 years ago
- ☆17Updated last year
- A module for improving the insertion sequences of structural variant calls☆31Updated 4 years ago
- Tool for decomposition centromeric assemblies and long reads into monomers☆36Updated 2 years ago
- Noise-Cancelling Repeat Finder☆25Updated 2 years ago
- A pipeline for scaffolding a genome assembly using Hi-C☆13Updated 2 years ago
- Possvm: find clusters of orthologs in phylogenies using species overlap & MCL☆14Updated last year
- Integrate multiple genome assemblies into a pangenome graph☆34Updated 3 years ago
- Compute N50/NG50 and auN/auNG☆32Updated last year
- Add multiple thread function for genome comparison☆15Updated 3 years ago
- VACmap: a long-read aligner specifically designed for complex structural variation discovery☆36Updated 3 weeks ago
- Correcting errors in noisy long reads using variation graphs☆51Updated 2 years ago
- Extracting paths from assembly graphs☆24Updated last year