beroukhim-lab / ascets
This repository contains the code to run the ASCETS arm-level copy number events caller for targeted sequencing data. ASCETS produces arm-level copy-number variant calls and arm-level weighted average log2 segment means from segmented copy number data.
☆16Updated last year
Alternatives and similar repositories for ascets
Users that are interested in ascets are comparing it to the libraries listed below
Sorting:
- ☆12Updated last year
- Workflow for Sequenza, cellularity and ploidy☆18Updated last month
- knowledge-based genotyping of cancer hotspots from the tumor BAM files☆21Updated 3 years ago
- CNAqc - Copy Number Alteration (CNA) Quality Check package☆21Updated last week
- R package for visualizing complex and multi-track 1D and 2D genomic data in GenomicRanges framework☆16Updated 4 months ago
- DRAGEN Tumor/Normal workflow post-processing☆22Updated last year
- iAnnotateSV is a Python library and command-line software toolkit to annotate and visualize structural variants detected from Next Genera…☆16Updated last month
- Combined mutation recurrence and functional impact to identify coding and non-coding cancer drivers☆15Updated 6 years ago
- ASCETIC (Agony-baSed Cancer EvoluTion InferenCe) is a novel framework for the inference of a set of statistically significant temporal pa…☆11Updated last month
- A set of tools to annotate VCF files with expression and readcount data☆29Updated 2 months ago
- Python function for TMB snake plots☆16Updated 4 years ago
- Advanced plotting functions for CNV data generated by CNV-Seq and Control Freec☆13Updated 4 years ago
- ☆10Updated 5 years ago
- Repo that aids in the detection of microsatellite instabilities (MSI) from sequencing data☆20Updated last year
- R package to organise and standardise your genomic variant calls obtained with different callers.☆11Updated 5 years ago
- R package specialized in HLA typing clustering and visualization based on specific similarity metrics☆12Updated 5 years ago
- Inferring selection in cancer sequencing data using ABC and population based simulations☆11Updated 4 years ago
- DriverPower☆26Updated 4 months ago
- ☆17Updated 9 months ago
- Filter and prioritize fusion calls☆20Updated 7 months ago
- Pipeline for the identification of cancer-related mutations from RNA-seq data☆13Updated 3 years ago
- Clinical Variant Annotation Pipeline☆10Updated 5 years ago
- BANDITS: Bayesian ANalysis of DIfferenTial Splicing☆17Updated last year
- CALDER (Cancer Analysis of Longitudinal Data through Evolutionary Reconstruction) reconstructs evolutionary trees from longitudinal bulk …☆15Updated last year
- ☆11Updated 6 years ago
- Callable Cancer Loci - assessment of sequencing coverage for actionable and pathogenic loci in cancer☆21Updated 4 years ago
- Correctly counting molecules using unique molecular identifiers (UMIs)☆9Updated 3 years ago
- ☆13Updated this week
- The R package "sarlacc" contains a pipeline to analyse nanopore sequencing data. It trims adapter sequences, retrieves optional UMI's, cl…☆13Updated 6 years ago
- Algorithm to implement Fraction and Allelic Copy number Estimate from Tumor/normal Sequencing using unmatched normal sample(s) for log ra…☆11Updated last year