This repository contains the code to run the ASCETS arm-level copy number events caller for targeted sequencing data. ASCETS produces arm-level copy-number variant calls and arm-level weighted average log2 segment means from segmented copy number data.
☆19Mar 24, 2026Updated 2 months ago
Alternatives and similar repositories for ascets
Users that are interested in ascets are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Repo that aids in the detection of microsatellite instabilities (MSI) from sequencing data☆21Apr 22, 2024Updated 2 years ago
- R package for visualizing complex and multi-track 1D and 2D genomic data in GenomicRanges framework☆17May 10, 2026Updated last month
- Convert structural variants to sequence graphs [ VCF + FASTA ---> GFA ]☆11Mar 6, 2024Updated 2 years ago
- Pan gGnome Viewer☆10Jul 10, 2025Updated 11 months ago
- R interface to megadepth: BigWig and BAM related utilities☆14Mar 31, 2026Updated 2 months ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- Utility functions for FACETS☆40Oct 24, 2025Updated 7 months ago
- Detects human contamination in bam files☆16Sep 10, 2020Updated 5 years ago
- ☆11Apr 25, 2024Updated 2 years ago
- Utility functions to extend and optimize GenomicRanges functionality.☆10Jun 4, 2026Updated last week
- ☆26Dec 9, 2022Updated 3 years ago
- Joint calling of gVCF, following GATK4 Best Practices☆12Apr 3, 2019Updated 7 years ago
- Algorithm to implement Fraction and Copy number Estimate from Tumor/normal Sequencing.☆162Feb 12, 2026Updated 4 months ago
- CNV Rapid Aberration Detection And Reporting☆12Mar 2, 2021Updated 5 years ago
- Visualize outputs of AmpliconArchitect and AmpliconReconstructor in Circos-style images.☆30Oct 10, 2025Updated 8 months ago
- Bare Metal GPUs on DigitalOcean Gradient AI • AdPurpose-built for serious AI teams training foundational models, running large-scale inference, and pushing the boundaries of what's possible.
- Codes to regenerate figures for mutagen paper☆12Apr 8, 2021Updated 5 years ago
- Code and data from Koche et al. Extrachromosomal circular DNA drives oncogenic genome remodeling in neuroblastoma (2020)☆15Nov 5, 2020Updated 5 years ago
- R API for browsing, analyzing, and manipulating reference-aligned genome graphs in a GenomicRanges framework☆41Jun 2, 2026Updated last week
- ☆12Feb 14, 2023Updated 3 years ago
- Support code for NGS copy number algorithms. Takes a file of locations and a [cr|b]am file and generates a count of coverage of each alle…☆44Aug 24, 2022Updated 3 years ago
- MIP based joint inference of copy number and rearrangement state in cancer whole genome sequence data.☆59Jun 1, 2026Updated last week
- Inferring and visualizing clonal evolution in multi-sample cancer sequencing☆150Sep 9, 2020Updated 5 years ago
- picking up low allelic-fraction, somatic variants from tumor samples☆14Jan 4, 2018Updated 8 years ago
- ☆13Jan 23, 2020Updated 6 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Toolkit for extracting SVs from long sequences and benchmarking variant callers☆13Jan 10, 2017Updated 9 years ago
- Non-parametric structural variant genotyper☆15Nov 18, 2021Updated 4 years ago
- A set of tools to annotate VCF files with expression and readcount data☆31Updated this week
- Tool for analyzing the inter-mutational distances between SNV-SNV and INDEL-INDEL mutations. Tool separates mutations into clustered and …☆14Updated this week
- ☆18Feb 18, 2021Updated 5 years ago
- ☆11May 26, 2023Updated 3 years ago
- Model-based tumour subclonal deconvolution using population genetics☆36Dec 2, 2025Updated 6 months ago
- Population-scale detection of non-reference sequence variants using colored de Bruijn Graphs☆26Apr 29, 2024Updated 2 years ago
- Battenberg R package for subclonal copynumber estimation☆97May 11, 2026Updated last month
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- Workflow for Sequenza, cellularity and ploidy☆28Updated this week
- This repository contains the source code of the revised version of MutPanning. MutPanning is publicly available under the BSD3-Clause ope…☆13Nov 12, 2019Updated 6 years ago
- Accucopy is a computational method that infers Allele-Specific Copy Number alterations from low-coverage low-purity tumor sequencing data…☆17Mar 6, 2024Updated 2 years ago
- a toolset for efficient analysis of 10X Genomics linked read data sets, in particular for de novo assembly☆15Nov 27, 2019Updated 6 years ago
- DriverPower☆26Jan 18, 2025Updated last year
- Probabilistic model for inferring clonal population structure from deep NGS sequencing.☆123Aug 19, 2020Updated 5 years ago
- Dirichlet Process based methods for subclonal reconstruction of tumours☆32Feb 18, 2026Updated 3 months ago