PacificBiosciences / sv-benchmark
Public Benchmark of Long-Read Structural Variant Caller on PacBio CCS HG002 Data
☆49Updated 4 years ago
Alternatives and similar repositories for sv-benchmark:
Users that are interested in sv-benchmark are comparing it to the libraries listed below
- Set of tools to manipulate and visualize modified base bam files☆52Updated 2 years ago
- ☆39Updated 10 months ago
- Variant annotation and merging pipeline☆32Updated 2 months ago
- Code for phasing SVs with SNPs☆52Updated 4 years ago
- ☆79Updated 2 weeks ago
- ☆21Updated 3 years ago
- Runs a combination of tools to generate structural variant calls on whole-genome sequencing data☆47Updated 4 years ago
- Reference-based variant calling pipeline for a pair of phased haplotype assemblies☆100Updated 3 years ago
- ☆48Updated 8 months ago
- Structural Variant Index☆72Updated 3 months ago
- Structural Variants Pipeline for Long Reads☆44Updated 6 years ago
- DEPRECATED - Workflow for the comprehensive detection and prioritization of variants in human genomes with PacBio HiFi reads☆38Updated last year
- heuristics to merge structural variant calls in VCF format.☆36Updated 8 years ago
- Efficient and accurate pathogenicity prediction for coding and regulatory structural variants in long-read genome sequencing☆35Updated 8 months ago
- Structural variant caller☆54Updated 3 years ago
- Error correction of ONT transcript reads☆59Updated last year
- Tools for the analysis of structural variation in genomes☆78Updated 11 months ago
- Simple pileup-based variant caller☆88Updated 3 weeks ago
- Somatic structural variant caller for long-read data☆60Updated last week
- Tool to annotate outfiles from ExpansionHunter and TRGT with the pathologic implications of the repeat☆32Updated 2 weeks ago
- Toolkit for calling structural variants using short or long reads☆100Updated this week
- ENCODE long read RNA-seq pipeline☆45Updated 2 years ago
- UCSC Nanopore☆43Updated 5 years ago
- Genotype and phase short tandem repeats using Illumina whole-genome sequencing data☆30Updated 3 years ago
- Identify and annotate TE-mediated insertions in long-read sequence data☆41Updated last year
- ☆22Updated 3 years ago
- Copy number variant caller and depth visualization utility for PacBio HiFi reads☆40Updated 4 months ago
- ☆48Updated 6 months ago
- Methylation Phasing for Nanopore Sequencing☆46Updated 2 years ago
- ☆39Updated 6 months ago