Public Benchmark of Long-Read Structural Variant Caller on PacBio CCS HG002 Data
☆52Feb 3, 2021Updated 5 years ago
Alternatives and similar repositories for sv-benchmark
Users that are interested in sv-benchmark are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- ultrafast structural variation detection from circular consensus sequencing reads☆13Mar 8, 2022Updated 4 years ago
- pbsv - PacBio structural variant (SV) calling and analysis tools☆166Feb 26, 2025Updated last year
- Structural variant toolkit for VCFs☆411May 22, 2026Updated last week
- SMRT-SV: Structural variant and indel caller for PacBio reads☆28Feb 21, 2019Updated 7 years ago
- A python wrapper around SURVIVOR☆20Feb 15, 2024Updated 2 years ago
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- Structural Variant Identification Method using Long Reads☆181Jun 29, 2021Updated 4 years ago
- Kmer based genotyper for short reads.☆23Oct 19, 2021Updated 4 years ago
- VarIant SimulatOR for short, long and linked reads☆54Oct 21, 2024Updated last year
- Long read based human genomic structural variation detection with cuteSV☆287Mar 26, 2026Updated 2 months ago
- Calling deletions using deep convolutional neural☆25Feb 12, 2020Updated 6 years ago
- de Bruijn Graph-based read aligner☆36Sep 3, 2018Updated 7 years ago
- Structural variant caller for real-time long-read sequencing data☆62Dec 1, 2022Updated 3 years ago
- Structural variant caller☆55Dec 8, 2021Updated 4 years ago
- Jasmine: SV Merging Across Samples☆252Dec 20, 2024Updated last year
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- ☆17Jan 5, 2021Updated 5 years ago
- Method to optimally select samples for validation and resequencing☆30Apr 6, 2021Updated 5 years ago
- Tools for the analysis of structural variation in genomes☆81Feb 23, 2026Updated 3 months ago
- ☆15Aug 1, 2021Updated 4 years ago
- deSALT - De Bruijn graph-based Spliced Aligner for Long Transcriptome reads☆44Sep 5, 2022Updated 3 years ago
- Structural variation caller using third generation sequencing☆658May 18, 2026Updated last week
- Functions to compare a SV call sets against a truth set.☆31Jun 18, 2025Updated 11 months ago
- Segmental Duplication Assembler (SDA).☆44May 7, 2023Updated 3 years ago
- ☆37Apr 13, 2024Updated 2 years ago
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- Transformer-based sequence correction method for genome assembly polishing☆104Mar 11, 2025Updated last year
- Regenotyping structural variants through an accurate and efficient force-calling method☆26Apr 17, 2026Updated last month
- A efficient method to construct BWT index of a given DNA sequence, especially useful for gigantic and high similar genome.☆15May 4, 2016Updated 10 years ago
- ☆84Mar 3, 2025Updated last year
- Annotation and Ranking of Structural Variation☆297Updated this week
- A long-read analysis toolbox for cancer and population genomics☆23Jul 1, 2025Updated 10 months ago
- SV genotyping with long reads☆40Jul 3, 2023Updated 2 years ago
- Structural Variants Pipeline for Long Reads☆45Jul 17, 2018Updated 7 years ago
- Run multiple programs to check if a VCF is usable☆11May 15, 2020Updated 6 years ago
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- A VCF comparison engine for structual variant benchmarking☆24Sep 26, 2025Updated 8 months ago
- Pipeline for calling structural variations in whole genomes sequencing Oxford Nanopore data☆115Oct 25, 2021Updated 4 years ago
- Long read aligner☆114May 26, 2023Updated 3 years ago
- lumpy: a general probabilistic framework for structural variant discovery☆342Feb 22, 2026Updated 3 months ago
- A tool to detect structural variant☆17Mar 27, 2023Updated 3 years ago
- Archived version 1.0.2☆16Nov 25, 2019Updated 6 years ago
- Methods to integrate data from multiple genome sequencing datasets and form consensus variant calls☆45Jan 26, 2022Updated 4 years ago