Public Benchmark of Long-Read Structural Variant Caller on PacBio CCS HG002 Data
☆52Feb 3, 2021Updated 5 years ago
Alternatives and similar repositories for sv-benchmark
Users that are interested in sv-benchmark are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- ultrafast structural variation detection from circular consensus sequencing reads☆13Mar 8, 2022Updated 4 years ago
- pbsv - PacBio structural variant (SV) calling and analysis tools☆168Jul 15, 2026Updated last month
- Structural variant toolkit for VCFs☆422May 22, 2026Updated 3 months ago
- SMRT-SV: Structural variant and indel caller for PacBio reads☆28Feb 21, 2019Updated 7 years ago
- A python wrapper around SURVIVOR☆20Feb 15, 2024Updated 2 years ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- Structural Variant Identification Method using Long Reads☆186Jun 29, 2021Updated 5 years ago
- Kmer based genotyper for short reads.☆23Oct 19, 2021Updated 4 years ago
- VarIant SimulatOR for short, long and linked reads☆54Oct 21, 2024Updated last year
- de Bruijn Graph-based read aligner☆36Sep 3, 2018Updated 8 years ago
- Long read based human genomic structural variation detection with cuteSV☆292Aug 21, 2026Updated 2 weeks ago
- Structural variant caller for real-time long-read sequencing data☆62Dec 1, 2022Updated 3 years ago
- Calling deletions using deep convolutional neural☆26Feb 12, 2020Updated 6 years ago
- Structural variant caller☆54Dec 8, 2021Updated 4 years ago
- Jasmine: SV Merging Across Samples☆259Dec 20, 2024Updated last year
- Simple, predictable pricing with DigitalOcean hosting • AdAlways know what you'll pay with monthly caps and flat pricing. Enterprise-grade infrastructure trusted by 600k+ customers.
- ☆17Jan 5, 2021Updated 5 years ago
- Method to optimally select samples for validation and resequencing☆30Apr 6, 2021Updated 5 years ago
- Tools for the analysis of structural variation in genomes☆81Feb 23, 2026Updated 6 months ago
- deSALT - De Bruijn graph-based Spliced Aligner for Long Transcriptome reads☆44Sep 5, 2022Updated 4 years ago
- ☆15Aug 1, 2021Updated 5 years ago
- Regenotyping structural variants through an accurate and efficient force-calling method☆26Apr 17, 2026Updated 4 months ago
- A efficient method to construct BWT index of a given DNA sequence, especially useful for gigantic and high similar genome.☆15May 4, 2016Updated 10 years ago
- Structural variation caller using third generation sequencing☆678Updated this week
- Functions to compare a SV call sets against a truth set.☆32Jun 18, 2025Updated last year
- GPUs on demand by Runpod - Special Offer Available • AdRun AI, ML, and HPC workloads on powerful cloud GPUs—without limits or wasted spend. Deploy GPUs in under a minute and pay by the second.
- comparative genome dot plot viewer☆10May 19, 2019Updated 7 years ago
- Segmental Duplication Assembler (SDA).☆44May 7, 2023Updated 3 years ago
- ☆38Apr 13, 2024Updated 2 years ago
- ☆85Mar 3, 2025Updated last year
- Annotation and Ranking of Structural Variation☆311Aug 11, 2026Updated 3 weeks ago
- Archived version 1.0.2☆16Nov 25, 2019Updated 6 years ago
- A long-read analysis toolbox for cancer and population genomics☆23Jul 1, 2025Updated last year
- SV genotyping with long reads☆40Jul 3, 2023Updated 3 years ago
- Structural Variants Pipeline for Long Reads☆45Jul 17, 2018Updated 8 years ago
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- Run multiple programs to check if a VCF is usable☆11May 15, 2020Updated 6 years ago
- Pipeline for calling structural variations in whole genomes sequencing Oxford Nanopore data☆114Oct 25, 2021Updated 4 years ago
- A VCF comparison engine for structual variant benchmarking☆24Sep 26, 2025Updated 11 months ago
- lumpy: a general probabilistic framework for structural variant discovery☆346Feb 22, 2026Updated 6 months ago
- Long read aligner☆115May 26, 2023Updated 3 years ago
- Pangenome-based structural variation caller☆28Jan 20, 2026Updated 7 months ago
- A tool to detect structural variant☆17Mar 27, 2023Updated 3 years ago