PacificBiosciences / sv-benchmarkLinks
Public Benchmark of Long-Read Structural Variant Caller on PacBio CCS HG002 Data
☆51Updated 4 years ago
Alternatives and similar repositories for sv-benchmark
Users that are interested in sv-benchmark are comparing it to the libraries listed below
Sorting:
- ☆83Updated 10 months ago
- Set of tools to manipulate and visualize modified base bam files☆58Updated 3 years ago
- Methylation Phasing for Nanopore Sequencing☆49Updated 2 years ago
- Code for phasing SVs with SNPs☆52Updated 5 years ago
- Reference-based variant calling pipeline for a pair of phased haplotype assemblies☆105Updated 4 years ago
- Structural Variants Pipeline for Long Reads☆44Updated 7 years ago
- Structural variant caller☆55Updated 4 years ago
- Copy number caller for long read data including SNV utilization☆68Updated 9 months ago
- Error correction of ONT transcript reads☆58Updated 2 years ago
- Variant annotation and merging pipeline☆41Updated 5 months ago
- Structural variant caller for real-time long-read sequencing data☆61Updated 3 years ago
- Toolkit for calling structural variants using short or long reads☆115Updated last week
- DEPRECATED - Workflow for the comprehensive detection and prioritization of variants in human genomes with PacBio HiFi reads☆39Updated 2 years ago
- Runs a combination of tools to generate structural variant calls on whole-genome sequencing data☆48Updated 5 years ago
- Tools for the analysis of structural variation in genomes☆81Updated last year
- heuristics to merge structural variant calls in VCF format.☆38Updated 9 years ago
- Genome scaffolding based on HiC data in heterozygous and high ploidy genomes☆60Updated last year
- MethPhaser: methylation-based haplotype phasing of human genomes☆52Updated 10 months ago
- ☆51Updated last year
- Structural Variant Index☆75Updated last year
- Efficient and accurate pathogenicity prediction for coding and regulatory structural variants in long-read genome sequencing☆39Updated last month
- ☆78Updated 5 years ago
- Pipeline for structural variation detection in cohorts☆52Updated 4 years ago
- Specifications for PacBio® native file formats☆31Updated last year
- Simple pileup-based variant caller☆95Updated 8 months ago
- MarginPolish: Graph based assembly polishing☆47Updated 5 years ago
- ☆46Updated 5 years ago
- A Nextflow workflow to generate lift over files for any pair of genomes☆69Updated last month
- ☆44Updated last month
- Identify and annotate TE-mediated insertions in long-read sequence data☆46Updated 6 months ago