walaj / svlibLinks
Toolkit for extracting SVs from long sequences and benchmarking variant callers
☆13Updated 8 years ago
Alternatives and similar repositories for svlib
Users that are interested in svlib are comparing it to the libraries listed below
Sorting:
- Linear-time, low-memory construction of variation graphs☆20Updated 5 years ago
- URMAP ultra-fast read mapper☆38Updated 5 years ago
- de Bruijn Graph-based read aligner☆33Updated 7 years ago
- Hidden Markov Model based Copy number caller☆20Updated 10 months ago
- The Modular Aligner and The Modular SV Caller☆46Updated 2 years ago
- Population-scale detection of novel sequence insertions☆27Updated 3 years ago
- Population-wide Deletion Calling☆35Updated 5 months ago
- Lift-over alignments from variant-aware references☆34Updated 2 years ago
- ☆28Updated 5 months ago
- Kmer based genotyper for short reads.☆23Updated 3 years ago
- Minimalistic aligner which uses Minimap for input mapping locations and Edlib for fast bitvector alignment.☆11Updated 8 years ago
- ☆14Updated 2 years ago
- Reducing reference bias using multiple population reference genomes☆33Updated last year
- Population-scale detection of non-reference sequence variants using colored de Bruijn Graphs☆24Updated last year
- This repo is deprecated. Please use gfatools instead.☆15Updated 7 years ago
- Long Approximate Matches-based Split Aligner☆13Updated 8 years ago
- genotyping by Mapping-free ALternate-allele detection of known VAriants☆10Updated 2 years ago
- a toolset for fast DNA read set matching and assembly using a new type of reduced kmer☆37Updated 4 years ago
- base-accurate DNA sequence alignments using edlib and mashmap2☆32Updated 4 years ago
- Convert structural variants to sequence graphs [ VCF + FASTA ---> GFA ]☆11Updated last year
- program for haplotype phasing from sequence reads and related tools☆25Updated 6 years ago
- GFA insert into GenomicSQLite☆48Updated 4 years ago
- ☆21Updated 5 years ago
- ☆24Updated 3 weeks ago
- Python bindings to minimap2☆16Updated 8 years ago
- Graphite - Graph-based variant adjudication☆28Updated 4 years ago
- ☆34Updated 5 years ago
- Wrapper for RTG's vcfeval; DEPRECATED!☆21Updated 9 years ago
- A long-read analysis toolbox for cancer and population genomics☆23Updated 2 months ago
- Indel-aware consensus for aligned BAM☆21Updated last month