Alternatives and similar repositories for svlib

Users that are interested in svlib are comparing it to the libraries listed below

• rcedgar / urmap
  URMAP ultra-fast read mapper
  ☆38Updated 5 years ago
• edawson / svaha2
  Linear-time, low-memory construction of variation graphs
  ☆20Updated 5 years ago
• kehrlab / PopDel
  Population-wide Deletion Calling
  ☆35Updated 7 months ago
• alshai / levioSAM
  Lift-over alignments from variant-aware references
  ☆34Updated 2 years ago
• kehrlab / PopIns2
  Population-scale detection of non-reference sequence variants using colored de Bruijn Graphs
  ☆26Updated last year
• ChaissonLab / hmcnc
  Hidden Markov Model based Copy number caller
  ☆20Updated last year
• AlgoLab / malva
  genotyping by Mapping-free ALternate-allele detection of known VAriants
  ☆10Updated 2 years ago
• HongzheGuo / deBGA
  de Bruijn Graph-based read aligner
  ☆34Updated 7 years ago
• JialiUMassWengLab / laSV
  laSV is a software package that employs local assembly to detect structural variations from whole-genome high-throughput sequencing datas…
  ☆12Updated 9 years ago
• langmead-lab / reference_flow
  Reducing reference bias using multiple population reference genomes
  ☆34Updated last year
• fritzsedlazeck / nibSV
  Kmer based genotyper for short reads.
  ☆23Updated 4 years ago
• jts / mbtools
  ☆14Updated 2 years ago
• VGP / vgp-tools
  ☆28Updated 7 months ago
• bede / kindel
  Indel-aware consensus for aligned BAM
  ☆21Updated 3 months ago
• ITBE-Lab / MA
  The Modular Aligner and The Modular SV Caller
  ☆46Updated 2 years ago
• BilkentCompGen / hercules
  Profile HMM-based hybrid error correction algorithm for long reads
  ☆21Updated 7 years ago
• lh3 / pre-pe
  Preprocessing paired-end reads produced with experiment-specific protocols
  ☆32Updated 7 years ago
• DecodeGenetics / LRcaller
  ☆16Updated 3 years ago
• bkehr / popins
  Population-scale detection of novel sequence insertions
  ☆27Updated 3 years ago
• isovic / minialign
  Minimalistic aligner which uses Minimap for input mapping locations and Edlib for fast bitvector alignment.
  ☆11Updated 8 years ago
• bcgsc / ntHits
  Identifying repeats in high-throughput sequencing data
  ☆16Updated last year
• Parsoa / Nebula
  Ultra-efficient mapping-free structural variation genotyper
  ☆19Updated 4 years ago
• hitbc / LAMSA
  Long Approximate Matches-based Split Aligner
  ☆13Updated 8 years ago
• mikolmogorov / pbclip
  A simple tool to fix PacBio fasta/q that was not properly split into subreads
  ☆16Updated 4 years ago
• Kmer-File-Format / kff-reference
  Contains the description of a file format to store kmers and associated values
  ☆33Updated 3 years ago
• edawson / rkmh
  Classify sequencing reads using MinHash.
  ☆48Updated 5 years ago
• jmonlong / sveval
  Functions to compare a SV call sets against a truth set.
  ☆30Updated 5 months ago
• dillonl / graphite
  Graphite - Graph-based variant adjudication
  ☆28Updated 4 years ago
• richarddurbin / modimizer
  a toolset for fast DNA read set matching and assembly using a new type of reduced kmer
  ☆37Updated 4 years ago
• uio-bmi / two_step_graph_mapper
  ☆21Updated 6 years ago