walaj / svlibLinks
Toolkit for extracting SVs from long sequences and benchmarking variant callers
☆13Updated 8 years ago
Alternatives and similar repositories for svlib
Users that are interested in svlib are comparing it to the libraries listed below
Sorting:
- Population-scale detection of novel sequence insertions☆27Updated 2 years ago
- de Bruijn Graph-based read aligner☆33Updated 6 years ago
- URMAP ultra-fast read mapper☆39Updated 5 years ago
- The Modular Aligner and The Modular SV Caller☆46Updated 2 years ago
- Linear-time, low-memory construction of variation graphs☆20Updated 5 years ago
- Hidden Markov Model based Copy number caller☆20Updated 9 months ago
- Long Approximate Matches-based Split Aligner☆13Updated 8 years ago
- Population-wide Deletion Calling☆35Updated 3 months ago
- Lift-over alignments from variant-aware references☆35Updated 2 years ago
- Graphite - Graph-based variant adjudication☆28Updated 4 years ago
- ☆28Updated 4 months ago
- laSV is a software package that employs local assembly to detect structural variations from whole-genome high-throughput sequencing datas…☆12Updated 8 years ago
- a toolset for fast DNA read set matching and assembly using a new type of reduced kmer☆37Updated 4 years ago
- base-accurate DNA sequence alignments using edlib and mashmap2☆33Updated 4 years ago
- ☆14Updated last year
- ☆25Updated 4 years ago
- This repo is deprecated. Please use gfatools instead.☆16Updated 6 years ago
- ☆16Updated 3 years ago
- Wrapper for RTG's vcfeval; DEPRECATED!☆21Updated 9 years ago
- Profile HMM-based hybrid error correction algorithm for long reads☆21Updated 6 years ago
- genotyping by Mapping-free ALternate-allele detection of known VAriants☆10Updated 2 years ago
- ☆21Updated 5 years ago
- Population-scale detection of non-reference sequence variants using colored de Bruijn Graphs☆24Updated last year
- Minimalistic aligner which uses Minimap for input mapping locations and Edlib for fast bitvector alignment.☆10Updated 8 years ago
- Improved structural variant discovery in accurate long reads using sample-specific strings (SFS)☆43Updated last month
- Kmer based genotyper for short reads.☆23Updated 3 years ago
- efficient alignment of strings to partially ordered string graphs☆33Updated 3 years ago
- ☆34Updated 5 years ago
- program for haplotype phasing from sequence reads and related tools☆25Updated 6 years ago
- Structural variant (SV) analysis tools☆36Updated last year