Alternatives and similar repositories for StrandPhaseR:

Users that are interested in StrandPhaseR are comparing it to the libraries listed below

• MarioniLab / CELLOseq
  Transposable element expression at unique loci in single cells with CELLO-seq
  ☆8Updated 7 months ago
• ajank / balancer-paper
  Computational analyses of WGS, mate-pair, RNA-seq, Hi-C and Capture-C data from highly rearranged balancer chromosomes in Drosophila mela…
  ☆10Updated 5 years ago
• UMCUGenetics / COLO829_somaticSV
  Scripts and files used in the generation of the COLO829 somatic SV truthset.
  ☆11Updated 2 years ago
• smithlabcode / abismal
  Abismal is a mapper of FASTQ bisulfite-converted short reads (between 50 and 1000 bases) to a FASTA reference genome.
  ☆17Updated 2 months ago
• gimelbrantlab / Qllelic
  Enabling differential allele-specific analysis
  ☆11Updated 3 weeks ago
• AlexandrovLab / SigProfilerTopography
  SigProfilerTopography allows evaluating the effect of chromatin organization, histone modifications, transcription factor binding, DNA re…
  ☆19Updated last month
• zhongw2 / GeneTEFlow
  ☆23Updated 3 years ago
• MarioniLab / sarlacc
  The R package "sarlacc" contains a pipeline to analyse nanopore sequencing data. It trims adapter sequences, retrieves optional UMI's, cl…
  ☆13Updated 5 years ago
• parklab / SCAN2
  SCAN2 is a somatic SNV and indel genotyper for single cells amplified by Primary Template-Directed Amplification (PTA)
  ☆11Updated 5 months ago
• shahcompbio / wgs
  Whole genome workflows
  ☆12Updated 2 months ago
• NCBI-Hackathons / HLAClustRView
  R package specialized in HLA typing clustering and visualization based on specific similarity metrics
  ☆12Updated 5 years ago
• mskilab-org / nf-jabba
  ☆13Updated 6 months ago
• XiDsLab / TAGET
  ☆17Updated 2 years ago
• cyang235 / smooth-seq
  A pipeline for Smooth-seq data analysis.
  ☆10Updated 3 years ago
• timplab / nanoNOMe
  nanoNOMe (Nucleosome Occupancy and Methylome nanopore sequencing) Analysis
  ☆18Updated 2 years ago
• gymreklab / snpstr-imputation
  Scripts for analyses and figures for SNP STR Imputation manuscript
  ☆12Updated 6 years ago
• heinc1010 / BAMixChecker
  BAMixChecker: A fast and efficient tool for sample matching checkup
  ☆14Updated 2 years ago
• AmpliconSuite / AmpliconReconstructorOM
  Reconstructs complex variation using Bionano optical mapping data and breakpoint graph data
  ☆16Updated last year
• deWitLab / GENOVA
  GENome Organisation Visual Analytics
  ☆15Updated 3 years ago
• henssenlab / TreeShapedRearrangements
  Code and data from Koche et al. Extrachromosomal circular DNA drives oncogenic genome remodeling in neuroblastoma (2020)
  ☆15Updated 4 years ago
• cortes-ciriano-lab / ReConPlot
  ☆21Updated last month
• VanLoo-lab / CAMDAC
  ☆11Updated 3 months ago
• ay-lab / HiCnv
  HiCnv is used to call copy number variations and breakpoints from Hi-C data
  ☆21Updated 9 months ago
• mckellardw / STRS
  Suite of analysis tools for spatial total RNA-sequencing
  ☆11Updated last year
• Gregor-Mendel-Institute / bookend
  End-guided RNA assembler
  ☆15Updated 2 months ago
• emily-mitchell / normal_haematopoiesis
  ☆8Updated 2 years ago
• TNTurnerLab / HAT
  HAT is a set of tools for calling de novo variants from whole-genome sequencing data.
  ☆23Updated 9 months ago
• clemgoub / TypeTE
  Genotyping of segregating mobile elements insertions
  ☆19Updated 3 years ago
• amf71 / ECLIPSE
  ☆11Updated last year
• homeveg / nuctools
  software for analysis of chromatin feature occupancy profiles from high-throughput sequencing data
  ☆16Updated 5 years ago