daewoooo / StrandPhaseR
R Package for phasing of single cell Strand-seq data
☆10Updated 7 months ago
Related projects ⓘ
Alternatives and complementary repositories for StrandPhaseR
- Transposable element expression at unique loci in single cells with CELLO-seq☆8Updated 5 months ago
- Computational analyses of WGS, mate-pair, RNA-seq, Hi-C and Capture-C data from highly rearranged balancer chromosomes in Drosophila mela…☆10Updated 5 years ago
- Whole genome workflows☆12Updated 2 weeks ago
- Abismal is a mapper of FASTQ bisulfite-converted short reads (between 50 and 1000 bases) to a FASTA reference genome.☆12Updated 3 weeks ago
- ExOrthist: a pipeline to extract exon orthologies at any evolutionary distance.☆21Updated 2 weeks ago
- SCAN2 is a somatic SNV and indel genotyper for single cells amplified by Primary Template-Directed Amplification (PTA)☆11Updated 3 months ago
- nanoNOMe (Nucleosome Occupancy and Methylome nanopore sequencing) Analysis☆17Updated 2 years ago
- ☆24Updated 2 years ago
- HiCnv is used to call copy number variations and breakpoints from Hi-C data☆21Updated 7 months ago
- FINSURF is a tool designed to analyse lists of sequences variants in the human genome.☆11Updated 2 years ago
- ☆15Updated 2 years ago
- A pipeline for Smooth-seq data analysis.☆10Updated 3 years ago
- Predicting TF sequence-specificity similarity with weighted alignments☆12Updated 5 years ago
- ☆23Updated 3 years ago
- GENome Organisation Visual Analytics☆13Updated 2 years ago
- Scripts used for the ACT paper☆12Updated 3 years ago
- SigProfilerTopography allows evaluating the effect of chromatin organization, histone modifications, transcription factor binding, DNA re…☆19Updated last month
- Reconstructs complex variation using Bionano optical mapping data and breakpoint graph data☆16Updated last year
- ☆11Updated 2 years ago
- End-guided RNA assembler☆15Updated 2 weeks ago
- ☆8Updated 2 years ago
- ☆20Updated 4 years ago
- Genotyping of segregating mobile elements insertions☆19Updated 3 years ago
- Scripts and notebooks used in Akgol Oksuz et al. paper☆11Updated 3 years ago
- The R package "sarlacc" contains a pipeline to analyse nanopore sequencing data. It trims adapter sequences, retrieves optional UMI's, cl…☆13Updated 5 years ago
- Scripts for analyses and figures for SNP STR Imputation manuscript☆12Updated 6 years ago
- ☆10Updated 2 years ago
- Nextflow pipeline for BWA, BWA2 and STAR alignments☆12Updated 4 months ago
- Analysis pipeline for our circSC manuscript☆12Updated 2 years ago
- ☆19Updated last year