mskilab-org / gTrackLinks
R package for visualizing complex and multi-track 1D and 2D genomic data in GenomicRanges framework
☆17Updated 10 months ago
Alternatives and similar repositories for gTrack
Users that are interested in gTrack are comparing it to the libraries listed below
Sorting:
- This repository contains the code to run the ASCETS arm-level copy number events caller for targeted sequencing data. ASCETS produces arm…☆18Updated last year
- Filter and prioritize fusion calls☆20Updated last year
- Evolutionary frequency visualization tool of temporal data☆23Updated 3 years ago
- Flexible Bayesian inference of mutational signatures☆37Updated 2 years ago
- DriverPower☆26Updated 10 months ago
- Clonal and subclonal Copy Number Alteration quality check integrating somatic mutation☆24Updated last month
- R package specialized in HLA typing clustering and visualization based on specific similarity metrics☆14Updated 5 years ago
- An R package to interpret biological trends from DNA methylation data☆18Updated 3 years ago
- a parallel R package for detecting copy-number alterations from short sequencing reads☆23Updated 4 years ago
- knowledge-based genotyping of cancer hotspots from the tumor BAM files☆21Updated 3 years ago
- Code for creating cell-type-specific regulatory element annotation files☆18Updated last year
- mitochondrial variant analysis tools☆15Updated 4 years ago
- Allele-Specific Expression by Single-Cell RNA Sequencing☆29Updated 5 years ago
- SQUID detects both fusion-gene and non-fusion-gene structural variations from RNA-seq data☆42Updated 3 years ago
- A Package For Predicting The Disruptiveness Of Single Nucleotide Polymorphisms On Transcription Factor Binding Sites.☆30Updated last year
- R package to organise and standardise your genomic variant calls obtained with different callers.☆11Updated 6 years ago
- cfDNA analysis workflow☆22Updated 2 years ago
- Multi-sample cancer phylogeny reconstruction☆36Updated 8 years ago
- R package for applying Gamma-Poisson regression to identify statistical enrichment or depletion of somatic mutations in regions after cor…☆31Updated 2 weeks ago
- Abismal is a mapper of FASTQ bisulfite-converted short reads (between 50 and 1000 bases) to a FASTA reference genome.☆19Updated last month
- ☆12Updated 2 weeks ago
- MSKCC Reis-Filho Lab pipeline thingy☆18Updated last month
- COMETgazer mehylation analysis software suite☆10Updated 6 years ago
- Code for differential splicing comparison paper (Soneson, Matthes, et al.)☆20Updated 9 years ago
- Scripts and software supplement for "Gene-level differential analysis at transcript-level resolution" by Yi, Pimentel, Bray and Pachter☆19Updated 7 years ago
- Integrated workflow for SV calling from single-cell Strand-seq data☆24Updated 7 months ago
- Repo that aids in the detection of microsatellite instabilities (MSI) from sequencing data☆20Updated last year
- highly-efficient & lightweight mutation signature matrix aggregation☆19Updated 3 years ago
- BANDITS: Bayesian ANalysis of DIfferenTial Splicing☆18Updated last month
- Combined mutation recurrence and functional impact to identify coding and non-coding cancer drivers☆15Updated 7 years ago