mskilab-org / gTrack
R package for visualizing complex and multi-track 1D and 2D genomic data in GenomicRanges framework
☆16Updated last month
Related projects: ⓘ
- Allele-Specific Expression by Single-Cell RNA Sequencing☆28Updated 3 years ago
- A small R package to make sequencing read coverage plots in R.☆35Updated 2 years ago
- Filter and prioritize fusion calls☆20Updated last month
- BANDITS: Bayesian ANalysis of DIfferenTial Splicing☆16Updated 10 months ago
- This repository contains the code to run the ASCETS arm-level copy number events caller for targeted sequencing data. ASCETS produces arm…☆14Updated 7 months ago
- A Package For Predicting The Disruptiveness Of Single Nucleotide Polymorphisms On Transcription Factor Binding Sites.☆27Updated last month
- knowledge-based genotyping of cancer hotspots from the tumor BAM files☆19Updated 2 years ago
- AnaLysis routines for ePigenomicS data - 🏫 Bioconductor project☆16Updated last year
- ☆12Updated 4 years ago
- Optimizing Cancer Mutation Signatures Jointly with Sampling Likelihood☆10Updated 2 years ago
- CNAqc - Copy Number Alteration (CNA) Quality Check package☆17Updated last month
- An R package to interpret biological trends from DNA methylation data☆16Updated 2 years ago
- DriverPower☆25Updated 3 months ago
- Combined mutation recurrence and functional impact to identify coding and non-coding cancer drivers☆15Updated 5 years ago
- DRAGEN Tumor/Normal workflow post-processing☆21Updated last year
- An Efficient Multiple-Testing Adjustment for eQTL Studies that Accounts for Linkage Disequilibrium between Variants☆10Updated 4 years ago
- A flexible framework to annotate and prioritize cancer somatic mutations.☆8Updated 7 years ago
- Correctly counting molecules using unique molecular identifiers (UMIs)☆9Updated 2 years ago
- Modeling and correcting fragment sequence bias for RNA-seq☆24Updated 3 months ago
- R package to organise and standardise your genomic variant calls obtained with different callers.☆11Updated 5 years ago
- Code for differential splicing comparison paper (Soneson, Matthes, et al.)☆20Updated 8 years ago
- Flexible Bayesian inference of mutational signatures☆33Updated last year
- Singularity port of HLA typing based on an input exome BAM file and is currently infers infers alleles for the three major MHC class I (…☆13Updated 7 years ago
- Abismal is a mapper of FASTQ bisulfite-converted short reads (between 50 and 1000 bases) to a FASTA reference genome.☆12Updated last month
- hands-on for NGS/SNParray CNV call trainning☆17Updated 2 years ago
- Toolkit for QTL mapping and meta-analysis.☆16Updated 2 years ago
- miRge - microRNA alignment software for small RNA-seq data, now at v2.0☆27Updated 2 years ago
- Pairwise Hierarchical Model☆13Updated 2 years ago
- Chromatin segmentation in R☆19Updated 6 years ago
- iread☆23Updated 3 years ago