HongzheGuo / deBGA
de Bruijn Graph-based read aligner
☆33Updated 6 years ago
Alternatives and similar repositories for deBGA:
Users that are interested in deBGA are comparing it to the libraries listed below
- Minimalistic aligner which uses Minimap for input mapping locations and Edlib for fast bitvector alignment.☆10Updated 7 years ago
- Population-scale detection of novel sequence insertions☆27Updated 2 years ago
- ☆34Updated 5 years ago
- A efficient method to construct BWT index of a given DNA sequence, especially useful for gigantic and high similar genome.☆14Updated 8 years ago
- Scaffolding genomes using synthetic long read clouds☆20Updated 8 years ago
- program for haplotype phasing from sequence reads and related tools☆25Updated 6 years ago
- Tumour-only somatic mutation calling using long reads☆26Updated 5 months ago
- ☆17Updated 4 years ago
- Toolkit for extracting SVs from long sequences and benchmarking variant callers☆13Updated 8 years ago
- Exact Tandem Repeat Finder (not a TRF replacement)☆48Updated 5 years ago
- ☆21Updated 5 years ago
- Profile HMM-based hybrid error correction algorithm for long reads☆20Updated 6 years ago
- URMAP ultra-fast read mapper☆38Updated 4 years ago
- An algorithm for centromere assembly using long error-prone reads☆26Updated 3 years ago
- MarginPolish: Graph based assembly polishing☆46Updated 4 years ago
- Pipeline code for creating a fully haplotype-resolved assembly from a combination of PacBio/ONT long reads and Illumina Strand-seq data☆16Updated last year
- My experimental tools on top of htslib. NOT OFFICIAL!!!☆55Updated last year
- ☆18Updated 2 months ago
- ☆28Updated last week
- Population-scale detection of non-reference sequence variants using colored de Bruijn Graphs☆24Updated 11 months ago
- Archived version 1.0.2☆16Updated 5 years ago
- d'accord is a non hybrid long read consensus program based on local de Bruijn graph assembly☆19Updated 6 years ago
- A reimplementation of the WaveFront Alignment algorithm at low memory☆49Updated 10 months ago
- Method to optimally select samples for validation and resequencing☆27Updated 4 years ago
- Assembler for raw de novo genome assembly of long uncorrected reads.☆37Updated 5 years ago
- Exploration of controlled loss of quality values for compressing CRAM files☆34Updated 2 years ago
- Graphite - Graph-based variant adjudication☆28Updated 4 years ago
- A software for discovery, genotyping and characterization of structural variants☆22Updated 7 months ago
- Kmer based genotyper for short reads.☆23Updated 3 years ago
- ☆32Updated 2 years ago