Alternatives and similar repositories for deBGA:

Users that are interested in deBGA are comparing it to the libraries listed below

• benedictpaten / marginPhase
  ☆35Updated 5 years ago
• DixianZhu / deBWT
  A efficient method to construct BWT index of a given DNA sequence, especially useful for gigantic and high similar genome.
  ☆14Updated 8 years ago
• uio-bmi / two_step_graph_mapper
  ☆21Updated 5 years ago
• vibansal / hapcut
  program for haplotype phasing from sequence reads and related tools
  ☆25Updated 6 years ago
• isovic / minialign
  Minimalistic aligner which uses Minimap for input mapping locations and Edlib for fast bitvector alignment.
  ☆10Updated 7 years ago
• jts / smrest
  Tumour-only somatic mutation calling using long reads
  ☆26Updated 3 months ago
• rcedgar / urmap
  URMAP ultra-fast read mapper
  ☆38Updated 4 years ago
• seryrzu / centroFlye
  An algorithm for centromere assembly using long error-prone reads
  ☆26Updated 3 years ago
• lh3 / pubLRasm
  ☆17Updated 4 years ago
• kuleshov / architect
  Scaffolding genomes using synthetic long read clouds
  ☆20Updated 8 years ago
• zhixingfeng / iGDA
  Detect and phase minor SNVs from long-read sequencing data
  ☆14Updated 3 years ago
• VGP / vgp-tools
  ☆28Updated last year
• kehrlab / PopIns2
  Population-scale detection of non-reference sequence variants using colored de Bruijn Graphs
  ☆24Updated 9 months ago
• walaj / svlib
  Toolkit for extracting SVs from long sequences and benchmarking variant callers
  ☆13Updated 8 years ago
• mlin / gfabase
  GFA insert into GenomicSQLite
  ☆48Updated 3 years ago
• mkirsche / Iris
  A module for improving the insertion sequences of structural variant calls
  ☆30Updated 3 years ago
• lh3 / etrf
  Exact Tandem Repeat Finder (not a TRF replacement)
  ☆47Updated 5 years ago
• ydLiu-HIT / SKSV
  ultrafast structural variation detection from circular consensus sequencing reads
  ☆13Updated 2 years ago
• BilkentCompGen / hercules
  Profile HMM-based hybrid error correction algorithm for long reads
  ☆20Updated 6 years ago
• tobiasrausch / lorax
  A long-read analysis toolbox for cancer and population genomics
  ☆21Updated last week
• benoukraflab / NanoVar---archived
  Archived version 1.0.2
  ☆16Updated 5 years ago
• bkehr / popins
  Population-scale detection of novel sequence insertions
  ☆27Updated 2 years ago
• fritzsedlazeck / SVCollector
  Method to optimally select samples for validation and resequencing
  ☆27Updated 3 years ago
• lbcb-sci / ra
  Assembler for raw de novo genome assembly of long uncorrected reads.
  ☆37Updated 5 years ago
• ptrebert / project-diploid-assembly
  Pipeline code for creating a fully haplotype-resolved assembly from a combination of PacBio/ONT long reads and Illumina Strand-seq data
  ☆15Updated 10 months ago
• AlgoLab / malva
  genotyping by Mapping-free ALternate-allele detection of known VAriants
  ☆10Updated last year
• lh3 / sgdp-fermi
  FermiKit small variant calls for public SGDP samples
  ☆17Updated 8 years ago
• lh3 / rtgeval
  Wrapper for RTG's vcfeval; DEPRECATED!
  ☆21Updated 8 years ago
• dillonl / graphite
  Graphite - Graph-based variant adjudication
  ☆28Updated 4 years ago
• lh3 / minisv
  Lightweight mosaic/somatic SV caller for long reads (WIP)
  ☆29Updated 2 months ago