HongzheGuo / deBGA
de Bruijn Graph-based read aligner
☆33Updated 6 years ago
Alternatives and similar repositories for deBGA:
Users that are interested in deBGA are comparing it to the libraries listed below
- A efficient method to construct BWT index of a given DNA sequence, especially useful for gigantic and high similar genome.☆14Updated 9 years ago
- ☆34Updated 5 years ago
- Minimalistic aligner which uses Minimap for input mapping locations and Edlib for fast bitvector alignment.☆10Updated 7 years ago
- program for haplotype phasing from sequence reads and related tools☆25Updated 6 years ago
- Scaffolding genomes using synthetic long read clouds☆20Updated 8 years ago
- Toolkit for extracting SVs from long sequences and benchmarking variant callers☆13Updated 8 years ago
- MarginPolish: Graph based assembly polishing☆46Updated 4 years ago
- ☆21Updated 5 years ago
- Tumour-only somatic mutation calling using long reads☆26Updated 6 months ago
- URMAP ultra-fast read mapper☆38Updated 4 years ago
- Population-scale detection of novel sequence insertions☆27Updated 2 years ago
- Pipeline code for creating a fully haplotype-resolved assembly from a combination of PacBio/ONT long reads and Illumina Strand-seq data☆16Updated last year
- My experimental tools on top of htslib. NOT OFFICIAL!!!☆55Updated last year
- Exact Tandem Repeat Finder (not a TRF replacement)☆49Updated 5 years ago
- A lightweight library for working with PAF (Pairwise mApping Format) files☆31Updated 3 years ago
- ultrafast structural variation detection from circular consensus sequencing reads☆13Updated 3 years ago
- An algorithm for centromere assembly using long error-prone reads☆26Updated 3 years ago
- FermiKit small variant calls for public SGDP samples☆17Updated 8 years ago
- ☆17Updated 4 years ago
- The Modular Aligner and The Modular SV Caller☆46Updated last year
- d'accord is a non hybrid long read consensus program based on local de Bruijn graph assembly☆19Updated 6 years ago
- Population-scale detection of non-reference sequence variants using colored de Bruijn Graphs☆24Updated last year
- ☆28Updated last month
- Exploration of controlled loss of quality values for compressing CRAM files☆34Updated 2 years ago
- Lightweight mosaic/somatic SV caller for long reads (WIP)☆28Updated 5 months ago
- INC-Seq: Accurate single molecule reads using nanopore sequencing☆14Updated 4 years ago
- Profile HMM-based hybrid error correction algorithm for long reads☆20Updated 6 years ago
- Archived version 1.0.2☆16Updated 5 years ago
- a toolset for fast DNA read set matching and assembly using a new type of reduced kmer☆37Updated 3 years ago
- deSAMBA: fast and accurate classification of metagenomics long reads with sparse approximate matches☆10Updated last year