HongzheGuo / deBGALinks
de Bruijn Graph-based read aligner
☆33Updated 7 years ago
Alternatives and similar repositories for deBGA
Users that are interested in deBGA are comparing it to the libraries listed below
Sorting:
- ☆34Updated 5 years ago
- The Modular Aligner and The Modular SV Caller☆46Updated 2 years ago
- Population-scale detection of novel sequence insertions☆27Updated 3 years ago
- Scaffolding genomes using synthetic long read clouds☆20Updated 8 years ago
- Minimalistic aligner which uses Minimap for input mapping locations and Edlib for fast bitvector alignment.☆11Updated 8 years ago
- Lift-over alignments from variant-aware references☆34Updated 2 years ago
- URMAP ultra-fast read mapper☆38Updated 5 years ago
- program for haplotype phasing from sequence reads and related tools☆25Updated 6 years ago
- A C++ library and utilities for manipulating the Graphical Fragment Assembly format.☆54Updated 3 years ago
- Profile HMM-based hybrid error correction algorithm for long reads☆21Updated 7 years ago
- Graphite - Graph-based variant adjudication☆28Updated 4 years ago
- Tumour-only somatic mutation calling using long reads☆27Updated 11 months ago
- base-accurate DNA sequence alignments using edlib and mashmap2☆32Updated 4 years ago
- Improved structural variant discovery in accurate long reads using sample-specific strings (SFS)☆45Updated last month
- ☆21Updated 5 years ago
- A efficient method to construct BWT index of a given DNA sequence, especially useful for gigantic and high similar genome.☆14Updated 9 years ago
- Population-wide Deletion Calling☆35Updated 5 months ago
- Toolkit for extracting SVs from long sequences and benchmarking variant callers☆13Updated 8 years ago
- A software for discovery, genotyping and characterization of structural variants☆22Updated last year
- efficient alignment of strings to partially ordered string graphs☆33Updated 3 years ago
- Archived version 1.0.2☆16Updated 5 years ago
- GFA insert into GenomicSQLite☆48Updated 4 years ago
- A lightweight library for working with PAF (Pairwise mApping Format) files☆30Updated 3 years ago
- a toolset for fast DNA read set matching and assembly using a new type of reduced kmer☆37Updated 4 years ago
- Graph based multi genome aligner☆48Updated 4 years ago
- Exact Tandem Repeat Finder (not a TRF replacement)☆50Updated 5 years ago
- Method to optimally select samples for validation and resequencing☆28Updated 4 years ago
- Optimized sequence graph implementations for graph genomics☆34Updated this week
- Reference-free variant discovery in large eukaryotic genomes☆41Updated 4 years ago
- my PhD thesis☆36Updated 6 years ago