Alternatives and similar repositories for vdsearch

Users that are interested in vdsearch are comparing it to the libraries listed below

• martinghunt / ziplign
  Simple-to-use interactive comparison of two bacterial genomes
  ☆16Updated last month
• althonos / pysylph
  PyO3 bindings and Python interface to sylph, an ultrafast method for containment ANI querying and taxonomic profiling.
  ☆18Updated 7 months ago
• althonos / pyskani
  PyO3 bindings and Python interface to skani, a method for fast genomic identity calculation using sparse chaining.
  ☆27Updated 3 weeks ago
• UriNeri / RVMT
  Code, scripts, some logs and general misc. from to the RNA viruses in MetaTranscriptome discovery project.
  ☆10Updated 2 years ago
• jonas-fuchs / virHEAT
  Visualize microbial evolution at the SNP level!
  ☆15Updated 2 months ago
• wh-xu / Hyper-Gen
  HyGen: Compact and Efficient Genome Sketching using Hyperdimensional Vectors
  ☆29Updated 11 months ago
• chg60 / phammseqs
  Assort phage protein sequences into phamilies using MMseqs2
  ☆10Updated 7 months ago
• robertaboukhalil / alignment-sandbox
  Tool for exploring sequence alignment algorithms
  ☆13Updated 11 months ago
• shenwei356 / ictv-taxdump
  NCBI-style taxdump files for International Committee on Taxonomy of Viruses (ICTV)
  ☆21Updated 3 months ago
• iqbal-lab-org / simutator
  Simulate mutations in genomes
  ☆15Updated 5 years ago
• LoadStar822 / Chimera
  Chimera: A Versatile Metagenomic Classification Tool
  ☆18Updated 4 months ago
• nick-youngblut / traitar3
  From genomes to phenotypes: Traitar3, the microbial trait analyzer (for Python3)
  ☆22Updated last year
• phiweger / uv
  Finding prophage regions in bacterial genomes using brute force
  ☆22Updated 2 years ago
• dr-joe-wirth / primerForge
  software to identify primers that can distinguish genomes
  ☆21Updated 6 months ago
• pg-space / panspace
  Embedding-based indexing for compact storage, rapid querying, and curation of bacterial pan-genomes
  ☆11Updated 2 weeks ago
• Ebedthan / xgt
  Efficient and fast querying and parsing of GTDB's data
  ☆28Updated last month
• fpusan / SuperPang
  Non-redundant pangenome assemblies from multiple genomes or bins
  ☆13Updated 2 months ago
• oxli-bio / oxli
  k-mers and the like
  ☆22Updated this week
• lmc297 / BTyper3
  In silico taxonomic classification of Bacillus cereus group genomes using whole-genome sequencing data
  ☆20Updated last year
• mbhall88 / nohuman
  Remove human reads from a sequencing run
  ☆40Updated last week
• rcedgar / newick
  Manipulate and generate figures for trees in Newick format
  ☆22Updated last week
• shenwei356 / strobemers
  A Go implementation of the strobemers (https://github.com/ksahlin/strobemers)
  ☆15Updated 4 years ago
• jolespin / pykofamsearch
  Fast implementation of KofamScan optimized for high-memory systems using PyHMMER
  ☆12Updated 3 weeks ago
• AfZheng126 / MORA
  MetagenOmic read Re-Assigner and abundance quantifier
  ☆19Updated 6 months ago
• rvaser / sword
  SWORD - a highly efficient protein database search
  ☆26Updated last year
• KatyBrown / plot_phylo
  Python package to plot a phylogenetic tree on an existing matplotlib axis.
  ☆23Updated 3 weeks ago
• bede / seqsum
  Robust individual and aggregate checksums for nucleotide sequences
  ☆17Updated last year
• RIVM-bioinformatics / AmpliGone
  A tool in order to accurately remove primer sequences from NGS reads in an amplicon experiment
  ☆20Updated 2 months ago
• broadinstitute / delphy
  Fast, scalable, accurate and accessible Bayesian phylogenetics
  ☆39Updated last month
• mmpust / raspir
  Raspir, the rare species identifier
  ☆11Updated last year