Viroid-like circRNA discovery and analysis suite
☆19Nov 11, 2023Updated 2 years ago
Alternatives and similar repositories for vdsearch
Users that are interested in vdsearch are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- A Pyrodigal extension to predict genes in giant viruses and viruses with alternative genetic code.☆23Nov 25, 2025Updated 6 months ago
- Code, scripts, some logs and general misc. from to the RNA viruses in MetaTranscriptome discovery project.☆12Jan 5, 2023Updated 3 years ago
- Iterative Gene clUster Analysis, a high-throughput method for gene cluster family identification.☆17Feb 26, 2026Updated 3 months ago
- ☆17Oct 7, 2024Updated last year
- Workflow to assign Taxonomy to a bacteriophage genome isolate☆40Apr 20, 2026Updated last month
- End-to-end encrypted cloud storage - Proton Drive • AdSpecial offer: 40% Off Yearly / 80% Off First Month. Protect your most important files, photos, and documents from prying eyes.
- Unified Human Gut Virome Catalog☆44Nov 10, 2025Updated 6 months ago
- easy_sbatch - Batch submitting Slurm jobs with script templates☆16Dec 28, 2021Updated 4 years ago
- ViromeQC is a computational tool to benchmark and quantify non-viral contamination in VLP-enrihed viromes. ViromeQC provides an enrichmen…☆21Nov 15, 2022Updated 3 years ago
- Bacterial Annotation by Learned Representation of Genes☆60Mar 26, 2026Updated 2 months ago
- Compute a pairwise SNP distance matrix from one or two alignment(s)☆26Sep 12, 2024Updated last year
- Genome size estimation from long read overlaps☆90May 1, 2026Updated 3 weeks ago
- Phage-Host Interaction Search Tool☆30Jul 8, 2024Updated last year
- Python library for identification and masking of low-complexity regions in nucleotide sequences☆13Mar 27, 2026Updated last month
- Generates a Python project structure for starting new projects☆28May 15, 2026Updated last week
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- Cyclic DNA Sequence Aligner☆11Apr 15, 2020Updated 6 years ago
- Machine learning for accurate identification and classification of CRISPR-Cas systems☆23Dec 20, 2024Updated last year
- ☆27Jan 30, 2025Updated last year
- Simulating paired-end short sequencing reads from circular and linear genomes☆15May 14, 2021Updated 5 years ago
- viralFlye pipeline☆19Aug 12, 2024Updated last year
- VariantStore: A Large-Scale Genomic Variant Search Index☆40Jul 9, 2021Updated 4 years ago
- A versatile toolkit for k-mers with taxonomic information☆82Aug 28, 2025Updated 8 months ago
- Taxonomy classification of viral sequences / contigs☆12Jul 15, 2025Updated 10 months ago
- Robust individual and aggregate checksums for nucleotide sequences☆17Mar 3, 2026Updated 2 months ago
- Proton VPN Special Offer - Get 70% off • AdSpecial partner offer. Trusted by over 100 million users worldwide. Tested, Approved and Recommended by Experts.
- PGPg_finder is a command-line tool that offers different workflows for genome and metagenome annotation of Plant-Growth Promotion Genes. …☆31Jan 20, 2026Updated 4 months ago
- RabbitTClust: enabling fast clustering analysis of millions bacteria genomes with MinHash sketches☆54May 10, 2026Updated 2 weeks ago
- frame-shift correction for long-read (meta)genomics☆33Dec 11, 2023Updated 2 years ago
- Validation of sycnmers compared to minimizers☆11May 10, 2025Updated last year
- PyO3 bindings and Python interface to skani, a method for fast genomic identity calculation using sparse chaining.☆29Aug 20, 2025Updated 9 months ago
- EMERALD calculates safety-windows by exploring the suboptimal alignment space☆17Jan 13, 2026Updated 4 months ago
- ☆13Feb 29, 2024Updated 2 years ago
- t-distributed stochastic neighbor embedding for microbiota data☆12May 12, 2019Updated 7 years ago
- Remove contaminated contigs from genomes using k-mers and taxonomies.☆60Nov 3, 2023Updated 2 years ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- ☆13May 18, 2026Updated last week
- ☆17May 26, 2022Updated 3 years ago
- SpacePHARER CRISPR Spacer Phage-Host pAiRs findER☆48May 8, 2024Updated 2 years ago
- LexicMap: efficient sequence alignment against millions of prokaryotic genomes☆219Updated this week
- PyO3 bindings and Python interface to sylph, an ultrafast method for containment ANI querying and taxonomic profiling.☆21Dec 12, 2024Updated last year
- Python and Rust library for loading, saving, and manipulating taxonomic trees☆54May 18, 2026Updated last week
- ☆34Oct 6, 2025Updated 7 months ago