Benjamin-Lee / vdsearchLinks
Viroid-like circRNA discovery and analysis suite
☆18Updated 2 years ago
Alternatives and similar repositories for vdsearch
Users that are interested in vdsearch are comparing it to the libraries listed below
Sorting:
- PyO3 bindings and Python interface to sylph, an ultrafast method for containment ANI querying and taxonomic profiling.☆20Updated last year
- Simple-to-use interactive comparison of two bacterial genomes☆19Updated 3 weeks ago
- PyO3 bindings and Python interface to skani, a method for fast genomic identity calculation using sparse chaining.☆28Updated 4 months ago
- Fast, scalable, accurate and accessible Bayesian phylogenetics☆40Updated 3 weeks ago
- StrainXpress is a de novo assembly method which base on overlap-layout-consensus (OLC) paradigm and can fast and accurately assemble high…☆13Updated last year
- From genomes to phenotypes: Traitar3, the microbial trait analyzer (for Python3)☆21Updated last year
- Assort phage protein sequences into phamilies using MMseqs2☆11Updated last year
- MetagenOmic read Re-Assigner and abundance quantifier☆18Updated 11 months ago
- Visualize microbial evolution at the SNP level!☆15Updated 5 months ago
- software to identify primers that can distinguish genomes☆20Updated 2 weeks ago
- ⚡️🧬 FastMLST: A multi-core tool for multilocus sequence typing of draft genome assemblies☆27Updated last month
- Protologgger is a tool for the description of novel taxa by providing taxonomic, functional and ecological insights☆16Updated last month
- GRIMER performs analysis of microbiome studies and generates a portable and interactive dashboard integrating annotation, taxonomy and me…☆24Updated 2 years ago
- Finding prophage regions in bacterial genomes using brute force☆22Updated 2 years ago
- Fast implementation of KofamScan optimized for high-memory systems using PyHMMER☆15Updated 4 months ago
- Code, scripts, some logs and general misc. from to the RNA viruses in MetaTranscriptome discovery project.☆11Updated 3 years ago
- Mandrake 🌿/👨🔬🦆 – Fast visualisation of the population structure of pathogens using Stochastic Cluster Embedding☆39Updated 10 months ago
- Python package to plot a phylogenetic tree on an existing matplotlib axis.☆27Updated 5 months ago
- NCBI-style taxdump files for International Committee on Taxonomy of Viruses (ICTV)☆21Updated 8 months ago
- Efficient and fast querying and parsing of GTDB's data☆29Updated 4 months ago
- Simulate mutations in genomes☆15Updated 5 years ago
- Python package to obtain, parse and explore biological taxonomies (GTDB, NCBI, Silva, Greengenes, OTT)☆47Updated 6 months ago
- Rapid & standardized annotation of bacterial genomes, MAGs & plasmids using protein structural information☆34Updated this week
- Embedding-based indexing for compact storage and rapid querying of bacterial pan-genomes☆20Updated last month
- A Pyrodigal extension to predict genes in giant viruses and viruses with alternative genetic code.☆20Updated last month
- Non-redundant pangenome assemblies from multiple genomes or bins☆14Updated 7 months ago
- Detect contigs of complete circular genomes☆23Updated 6 years ago
- Interpretative standards for AMR genotypes☆26Updated this week
- HyGen: Compact and Efficient Genome Sketching using Hyperdimensional Vectors☆30Updated last year
- In silico taxonomic classification of Bacillus cereus group genomes using whole-genome sequencing data☆21Updated last year