ifremer-bioinformatics / sambaLinks
Standardized and Automated MetaBarcoding Analyses workflow (Mirror)
☆13Updated 2 years ago
Alternatives and similar repositories for samba
Users that are interested in samba are comparing it to the libraries listed below
Sorting:
- ☆11Updated 4 years ago
- A quick workflow to get researchers started with the bioinformatic pipeline used in the Environmental Metagenomics program.☆12Updated 11 months ago
- Dadaist2 🟨 Highway to R☆13Updated 10 months ago
- A Nextflow pipeline designed to classify, align and assemble nanopore metagenomic reads.☆17Updated 10 months ago
- Collection of R scripts for SARS-CoV-2 (variant) analyses☆12Updated 2 years ago
- Protocols, data and code associated with the MK-SpikeSeq method for quantifying the absolute abundances of microbiota samples☆12Updated 4 years ago
- Interpretative standards for AMR genotypes☆26Updated this week
- Metagenomic Analysis in Real Time☆29Updated 2 months ago
- ccfind - circular complete genome finder with clues of terminal redundancy☆16Updated 5 years ago
- ☆22Updated 2 years ago
- pipeline for read mapping, snp calling and annotation for bacterial genomes☆13Updated last year
- Tools for extracting individual genomes from metagenomes☆16Updated 2 years ago
- Protologgger is a tool for the description of novel taxa by providing taxonomic, functional and ecological insights☆16Updated last month
- Prediction of microbial interactions in complex communities☆11Updated last year
- Week 3 of the OSU CoMS Webinar: Introduction to Amplicon Sequencing (QIIME, DADA2, mothur) and Ecological Statistics☆10Updated 2 years ago
- ☆14Updated 2 years ago
- ☆13Updated 8 years ago
- Rapid identification of Staphylococcus aureus agr locus type and agr operon variants.☆10Updated 3 years ago
- scripts for microbiome analysis☆11Updated last year
- Tool for constructing phylogenies and summarizing metabolic characteristics based on curated and custom profile HMMs☆17Updated 3 years ago
- An `R` package for various phylogenetic and evolutionary biology data manipulations☆12Updated 7 years ago
- Phylogenetic Organization of Metagenomic Signals (POMS)☆18Updated 3 years ago
- tool to determine optimal refrerence genome given a set of fasta files☆15Updated 2 years ago
- MiCoP is a method for high-accuracy profiling of viral and fungal metagenomic communities.☆15Updated 3 years ago
- Functions to manipulate and visualize microbial community data☆12Updated 2 years ago
- Plot genome alignment figure using progressiveMauve & genoPlotR☆22Updated 3 years ago
- Organism-specific interpretation of AMR genotypes☆15Updated last year
- Pipeline detecting distant and putative novel insertion sequences in prokaryotic genomes☆13Updated 4 years ago
- MAG Circularization Method☆32Updated 2 months ago
- Bacterial taxonomy construction and evaluation in R☆15Updated last year