Accurate metagenomi/metatranscriptomic analysis pipeline
☆23Jun 28, 2021Updated 4 years ago
Alternatives and similar repositories for agamemnon
Users that are interested in agamemnon are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Pan-Genomic Matching Statistics☆57Apr 3, 2024Updated 2 years ago
- viralFlye pipeline☆18Aug 12, 2024Updated last year
- ☆22Nov 12, 2025Updated 7 months ago
- MetScale: snakemake workflows to scale metagenome analyses☆19May 15, 2025Updated last year
- SAMSA pipeline, version 2.0. An open-source metatranscriptomics pipeline for analyzing microbiome data, built around DIAMOND and customi …☆64Mar 25, 2024Updated 2 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- A metatranscriptomic pipeline optimized for the study of microeukaryotes.☆17Dec 30, 2025Updated 5 months ago
- ProkEvo - an automated, reproducible, and scalable framework for high-throughput bacterial population genomics analyses.☆19Aug 16, 2021Updated 4 years ago
- Plot microbiome time series in parallel☆27Nov 7, 2023Updated 2 years ago
- Strain-level abundances estimation in metagenomic samples using variation graphs☆24Jan 29, 2023Updated 3 years ago
- ☆18Apr 6, 2022Updated 4 years ago
- Automatic eukaryotic taxonomic classification☆33May 9, 2025Updated last year
- Minimal Microbial Consortia creation tools☆13Jan 28, 2022Updated 4 years ago
- Snakemake workflow to map and quantify microbial genomes in metagenomic reads☆14Oct 10, 2025Updated 8 months ago
- ☆47Jun 27, 2023Updated 2 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- MetagenOmic read Re-Assigner and abundance quantifier☆20Jun 12, 2026Updated last week
- Metagenome analysis using the Kraken software suite☆38Sep 29, 2022Updated 3 years ago
- A pipeline for the identification of fungi in public metagenomics datasets☆18Nov 23, 2020Updated 5 years ago
- A Hierarchical Approach to Pangenomics Inference☆13Apr 15, 2024Updated 2 years ago
- ☆14Jun 1, 2026Updated 2 weeks ago
- C++ tools for NCBI taxonomy tasks☆12Jun 26, 2025Updated 11 months ago
- Python package simulating artificial selection on microbial communities☆15Aug 15, 2023Updated 2 years ago
- MUSiCC: A marker genes based framework for metagenomic normalization and accurate profiling of gene abundances in the microbiome☆18Nov 7, 2019Updated 6 years ago
- String algorithm visualizations☆14Feb 7, 2023Updated 3 years ago
- Deploy open-source AI quickly and easily - Special Bonus Offer • AdRunpod Hub is built for open source. One-click deployment and autoscaling endpoints without provisioning your own infrastructure.
- ViBE: a hierarchical BERT model to identify viruses using metagenome sequencing data☆11Sep 6, 2022Updated 3 years ago
- Scalable creating/updating of metagenome profiling databases☆62Jun 25, 2025Updated 11 months ago
- Robust individual and aggregate checksums for nucleotide sequences☆17Mar 3, 2026Updated 3 months ago
- ☆37Dec 6, 2023Updated 2 years ago
- A program for degenerate primer design for broad taxonomic-range PCR for microbial ecology studies☆32Jun 9, 2023Updated 3 years ago
- Bioinformatics program inStrain☆188Mar 12, 2026Updated 3 months ago
- Microbial agile accurate SNP Typer☆30Dec 27, 2023Updated 2 years ago
- Calculate the normalizing factors for zeroinflated sequencing data such as microbiome sequencing data☆16Jan 31, 2025Updated last year
- Accurate metagenomic profiling && Fast large-scale sequence/genome searching☆216Apr 24, 2026Updated last month
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Computation of average nucleotide identity with the use of MMseqs2☆24Dec 11, 2024Updated last year
- MetaCarvel: A scaffolder for metagenomes☆14Apr 13, 2026Updated 2 months ago
- Integrative virome pipeline☆13Nov 4, 2024Updated last year
- Meta-Omics Software for Community Analysis☆37Jun 4, 2026Updated 2 weeks ago
- Reorients assembled microbial sequences☆138Jun 5, 2026Updated 2 weeks ago
- Improvement of metagenome-assembled genomes☆58Mar 17, 2020Updated 6 years ago
- ☆12Apr 5, 2021Updated 5 years ago