Accurate metagenomi/metatranscriptomic analysis pipeline
☆23Jun 28, 2021Updated 5 years ago
Alternatives and similar repositories for agamemnon
Users that are interested in agamemnon are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- MetScale: snakemake workflows to scale metagenome analyses☆19May 15, 2025Updated last year
- Snakemake workflow to map and quantify microbial genomes in metagenomic reads☆14Oct 10, 2025Updated last year
- ☆23Sep 28, 2026Updated last month
- R package for differential expression analysis in metatranscriptomics☆12Jul 18, 2024Updated 2 years ago
- viralFlye pipeline☆19Aug 12, 2024Updated 2 years ago
- Simple, predictable pricing with DigitalOcean hosting • AdAlways know what you'll pay with monthly caps and flat pricing. Enterprise-grade infrastructure trusted by 600k+ customers.
- Pan-Genomic Matching Statistics☆59Apr 3, 2024Updated 2 years ago
- MetagenOmic read Re-Assigner and abundance quantifier☆22Jun 24, 2026Updated 4 months ago
- 雷 - kaminari (thunder/lightning)☆12May 4, 2026Updated 6 months ago
- SAMSA pipeline, version 2.0. An open-source metatranscriptomics pipeline for analyzing microbiome data, built around DIAMOND and customi…☆64Mar 25, 2024Updated 2 years ago
- A metatranscriptomic pipeline optimized for the study of microeukaryotes.☆18Dec 30, 2025Updated 10 months ago
- Strain-level abundances estimation in metagenomic samples using variation graphs☆24Jan 29, 2023Updated 3 years ago
- ProkEvo - an automated, reproducible, and scalable framework for high-throughput bacterial population genomics analyses.☆19Aug 16, 2021Updated 5 years ago
- ☆22Dec 9, 2023Updated 2 years ago
- Scalable creating/updating of metagenome profiling databases☆62Jun 25, 2025Updated last year
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Plot microbiome time series in parallel☆27Nov 7, 2023Updated 3 years ago
- ☆18Apr 6, 2022Updated 4 years ago
- Python package simulating artificial selection on microbial communities☆15Aug 15, 2023Updated 3 years ago
- Index kmtricks bf matrices☆49Oct 6, 2026Updated last month
- Automatic eukaryotic taxonomic classification☆33May 9, 2025Updated last year
- Minimal Microbial Consortia creation tools☆13Jan 28, 2022Updated 4 years ago
- ViBE: a hierarchical BERT model to identify viruses using metagenome sequencing data☆11Sep 6, 2022Updated 4 years ago
- VAriant Mapping and Prediction of antimicrobial resistance☆12Jun 8, 2026Updated 4 months ago
- ☆47Jun 27, 2023Updated 3 years ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- easy_sbatch - Batch submitting Slurm jobs with script templates☆16Dec 28, 2021Updated 4 years ago
- A pipeline for the identification of fungi in public metagenomics datasets☆18Nov 23, 2020Updated 5 years ago
- hifiasm_meta - de novo metagenome assembler, based on hifiasm, a haplotype-resolved de novo assembler for PacBio Hifi reads.☆70Nov 24, 2025Updated 11 months ago
- Accurate metagenomic profiling && Fast large-scale sequence/genome searching☆221Apr 24, 2026Updated 6 months ago
- Make coverage plots from bam files!☆16Mar 17, 2026Updated 7 months ago
- Benchmark data structures for kmer sets.☆13Aug 29, 2026Updated 2 months ago
- Metagenome analysis using the Kraken software suite☆38Sep 29, 2022Updated 4 years ago
- Magic gene-neighborhood analyses☆15Oct 6, 2026Updated last month
- Scripts to build high-quality genome-scale metabolic model by using a deep neural network to guide gapfilling☆19Oct 14, 2026Updated 3 weeks ago
- Virtual machines for every use case on DigitalOcean • AdGet dependable uptime with 99.99% SLA, simple security tools, and predictable monthly pricing with DigitalOcean's virtual machines, called Droplets.
- RNA virus analysis toolkit☆25Updated this week
- Teaching materials for SymbNET course: from MAGs to GEMs☆16Jan 8, 2024Updated 2 years ago
- ☆14Oct 13, 2026Updated 3 weeks ago
- C++ tools for NCBI taxonomy tasks☆12Jun 26, 2025Updated last year
- MetaCarvel: A scaffolder for metagenomes☆14Apr 13, 2026Updated 6 months ago
- Accurate and rapid RiboRNA sequences Detector based on deep learning☆129Feb 5, 2026Updated 9 months ago
- Computation of average nucleotide identity with the use of MMseqs2☆24Dec 11, 2024Updated last year