ivlachos / agamemnonLinks
Accurate metagenomi/metatranscriptomic analysis pipeline
☆23Updated 4 years ago
Alternatives and similar repositories for agamemnon
Users that are interested in agamemnon are comparing it to the libraries listed below
Sorting:
- PanPhlAn is a strain-level metagenomic profiling tool for identifying the gene composition of individual strains in metagenomic samples☆45Updated last year
- Set of utilities on sequences and BAM files☆27Updated 3 years ago
- PATO is a R package designed to analyze pangenomes (set of genomes) intra or inter species.☆59Updated last year
- ☆56Updated last year
- Scalable creating/updating of metagenome profiling databases☆61Updated 3 weeks ago
- A toolkit for prokaryotic comparative genomics☆49Updated 5 months ago
- GTDB taxonomy taxdump files with trackable TaxIds☆55Updated 2 months ago
- ☆41Updated 4 years ago
- Phylogeny Enhanded Prediction of PAN-genome☆40Updated 5 years ago
- Discover and annotate the virome☆44Updated 2 weeks ago
- ☆30Updated 6 months ago
- SynTracker is a pipeline, designated to determine the biological relatedness of conspecific strains (microbial strains of the same specie…☆32Updated 5 months ago
- SpacePHARER CRISPR Spacer Phage-Host pAiRs findER☆40Updated last year
- ☆72Updated this week
- Gene-flank analysis tool☆28Updated 7 months ago
- HoCoRT - Remove specific organisms from sequencing reads☆16Updated 6 months ago
- Detection of NCLDV signatures in 'omic data☆35Updated last year
- ☆32Updated 2 years ago
- Analysing Metagenomic Species (MGS)☆41Updated 4 years ago
- KEGG Module Evaluation Tool☆30Updated last year
- Calculation of the Percentage of Conserved Proteins following Qin, Xie et al. 2014 but using DIAMOND instead of BLASTP for alignments.☆26Updated 2 months ago
- A containerized bioinformatics pipeline for viral metagenomic data analysis☆32Updated 11 months ago
- scripts for estimating bacteria replication rates based on population genome copy number variation☆72Updated 5 years ago
- hifiasm_meta - de novo metagenome assembler, based on hifiasm, a haplotype-resolved de novo assembler for PacBio Hifi reads.☆68Updated last week
- Pipeline for metagenome and metatranscriptome joint assembly☆21Updated 2 years ago
- MetaGeneMark-2: Improved Gene Prediction in Metagenomes☆21Updated last year
- Inferring bacterial recombination rates from large-scale sequencing datasets.☆42Updated 2 years ago
- A curated list of phage related software and computational resources for phage scientists, bioinformaticians and enthusiasts.☆50Updated 3 years ago
- hecatomb is a virome analysis pipeline for analysis of Illumina sequence data☆58Updated last month
- ShortBRED is a pipeline to take a set of protein sequences, reduce them to a set of unique identifying strings ("markers"), and then sear…☆30Updated 5 months ago