ivlachos / agamemnonLinks
Accurate metagenomi/metatranscriptomic analysis pipeline
☆23Updated 4 years ago
Alternatives and similar repositories for agamemnon
Users that are interested in agamemnon are comparing it to the libraries listed below
Sorting:
- PanPhlAn is a strain-level metagenomic profiling tool for identifying the gene composition of individual strains in metagenomic samples☆45Updated last year
- Set of utilities on sequences and BAM files☆27Updated 3 years ago
- A toolkit for prokaryotic comparative genomics☆50Updated 6 months ago
- ☆73Updated last week
- Scalable creating/updating of metagenome profiling databases☆61Updated last month
- ☆56Updated last year
- ☆41Updated 4 years ago
- Metagenomic Intra-Species Diversity Analysis (MIDAS)☆39Updated 11 months ago
- SynTracker is a pipeline, designated to determine the biological relatedness of conspecific strains (microbial strains of the same specie…☆32Updated 2 weeks ago
- Bacterial GWAS analysis☆43Updated 2 weeks ago
- Analysing Metagenomic Species (MGS)☆41Updated 4 years ago
- Workflow to rapidly quantify taxa from all domains of life, directly from short-read human gut metagenomes☆65Updated last month
- Discover and annotate the virome☆45Updated 3 weeks ago
- GTDB taxonomy taxdump files with trackable TaxIds☆56Updated 3 months ago
- A tool for generating bacterial genomes from metagenomes with nanopore long read sequencing☆70Updated 3 years ago
- hecatomb is a virome analysis pipeline for analysis of Illumina sequence data☆58Updated 2 months ago
- ShortBRED is a pipeline to take a set of protein sequences, reduce them to a set of unique identifying strings ("markers"), and then sear…☆31Updated 6 months ago
- zol (& fai): large-scale targeted detection and evolutionary investigation of gene clusters (i.e. BGCs, phages, etc.)☆61Updated last week
- PATO is a R package designed to analyze pangenomes (set of genomes) intra or inter species.☆61Updated last year
- A curated list of phage related software and computational resources for phage scientists, bioinformaticians and enthusiasts.☆50Updated 3 years ago
- Improvement of metagenome-assembled genomes☆54Updated 5 years ago
- ☆31Updated 7 months ago
- SameStr identifies shared strains between pairs of metagenomic samples based on the similarity of SNV profiles.☆24Updated last week
- ☆46Updated 2 years ago
- Microbiome classification pipeline☆66Updated 2 months ago
- Ley Lab MetaGenome Profiler DataBase generator☆50Updated 2 years ago
- Snakemake pipeline for downstream analysis of metagenome-assembled genomes (MAGs) (pronounced mag-pie)☆62Updated 2 years ago
- More scalable dereplication for metagenome assembled genomes☆63Updated last week
- 🦠🧬🧑💻📇 Microbial genomes-to-report pipeline☆59Updated this week
- MetaGeneMark-2: Improved Gene Prediction in Metagenomes☆22Updated last year