hzi-bifo / Haploflow
☆29Updated last year
Alternatives and similar repositories for Haploflow:
Users that are interested in Haploflow are comparing it to the libraries listed below
- Rapid and simple taxonomic profiling of genome and metagenome contigs☆27Updated last year
- Code to create a PRG from a Multiple Sequence Alignment file☆23Updated 11 months ago
- Assembly based core genome SNP alignments for bacteria☆25Updated 5 years ago
- Strain-level haplotyping for metagenomes with short or long-reads.☆50Updated 7 months ago
- Find Unique genomic Regions☆29Updated last month
- Colinear block visualisation tool☆30Updated last year
- Output FASTQ summary statistics in JSON format☆29Updated 2 years ago
- Haplotype-aware genome assembly toolkit☆29Updated 5 years ago
- Fast and space-efficient taxonomic classification of long reads☆43Updated this week
- Plasmid analysis using rearrangement distances☆31Updated 3 months ago
- TAXnomic Profile Aggregation and STAndardisation☆35Updated 4 months ago
- GRIMER performs analysis of microbiome studies and generates a portable and interactive dashboard integrating annotation, taxonomy and me…☆22Updated 2 years ago
- Masks recombinant regions in an alignment based on ClonalFrameML output☆10Updated 6 years ago
- Quantifying the significance of genetic variation using probabilistic profile-based methods.☆19Updated 3 years ago
- Mandrake 🌿/👨🔬🦆 – Fast visualisation of the population structure of pathogens using Stochastic Cluster Embedding☆36Updated this week
- Read contamination removal☆24Updated last year
- strain-level analysis tools☆34Updated 4 months ago
- Interactive, web tool for exploring pan-genome of bacterial strains☆45Updated 2 years ago
- ZGA prokaryotic genome assembly and annotation pipeline☆12Updated 5 months ago
- Recombination-free trees☆57Updated last year
- Get microbial sequence data easier and faster☆28Updated 5 years ago
- Tutorial for bacterial GWAS pipline and bugwas, created for Bodega Bay 2016 NGS workshop☆18Updated 9 years ago
- A mathematically characterized hypothesis test for organism presence/absence in a metagenome☆30Updated this week
- Genomewide Epistasis Analysis on Bacteria☆14Updated 5 months ago
- Strain-level abundances estimation in metagenomic samples using variation graphs☆25Updated 2 years ago
- Genome size estimation from long read overlaps☆49Updated 2 months ago
- Gene-flank analysis tool☆27Updated 2 months ago
- A Python implementation of the OrthoANI algorithm for nucleotide identity measurement.☆24Updated last week
- SpydrPick: mutual information based detection of pairs of genomic loci co-evolving under a shared selective pressure.☆13Updated 2 years ago
- Masks recombination as detected by ClonalFrameML or Gubbins and draws an SVG☆20Updated 6 years ago