hzi-bifo / HaploflowLinks
☆30Updated 2 years ago
Alternatives and similar repositories for Haploflow
Users that are interested in Haploflow are comparing it to the libraries listed below
Sorting:
- Strain-level haplotyping for metagenomes with short or long-reads.☆55Updated 6 months ago
- reference-based long read assemblies of bacterial genomes☆51Updated 4 years ago
- Automated strain separation of low-complexity metagenomes☆50Updated 3 years ago
- Code to create a PRG from a Multiple Sequence Alignment file☆25Updated last month
- Haplotype-aware genome assembly toolkit☆29Updated 5 years ago
- Correcting errors in noisy long reads using variation graphs☆51Updated 2 years ago
- A draft genome scaffolder that uses multiple reference genomes in a graph-based approach.☆45Updated 4 years ago
- Colinear block visualisation tool☆31Updated last year
- In-depth characterization and annotation of differences between two sets of DNA sequences☆62Updated 5 years ago
- Fast and space-efficient taxonomic classification of long reads☆43Updated last month
- Software that separates very close sequences that have been collapsed during assembly. Uses only long reads.☆35Updated 5 months ago
- Recombination-free trees☆60Updated last month
- Full-length de novo viral haplotype reconstruction from noisy long reads☆20Updated last year
- ♥ Fast and Accurate Estimation of Evolutionary Distances☆29Updated 5 months ago
- Strain Resolution ON Graphs☆47Updated 2 years ago
- Intra-species bacterial contamination detection☆25Updated 7 months ago
- PanTax: Strain-level metagenomic profiling using pangenome graphs☆43Updated last month
- Fast and scalable nanopore adaptive sampling☆34Updated 2 years ago
- Find Unique genomic Regions☆30Updated 3 weeks ago
- Genome size estimation from long read overlaps☆61Updated 2 weeks ago
- Rapid and simple taxonomic profiling of genome and metagenome contigs☆29Updated 2 years ago
- Fast long-read mapper and whole-genome aligner (accelerated version of minimap2)☆35Updated 3 months ago
- Assembly based core genome SNP alignments for bacteria☆25Updated 5 years ago
- Remove contaminated contigs from genomes using k-mers and taxonomies.☆59Updated last year
- Mandrake 🌿/👨🔬🦆 – Fast visualisation of the population structure of pathogens using Stochastic Cluster Embedding☆38Updated 7 months ago
- Library of sketching functions used by PopPUNK☆30Updated 6 months ago
- tools for assessing the accuracy of genome assemblies☆34Updated last year
- MegaPath-Nano: Accurate Compositional Analysis and Drug-level Antimicrobial Resistance Detection Software for Oxford Nanopore Long-read M…☆14Updated 3 years ago
- viralFlye pipeline☆18Updated last year
- MetaCompass: Reference-guided Assembly of Metagenomes☆38Updated last month