☆30Sep 21, 2023Updated 2 years ago
Alternatives and similar repositories for Haploflow
Users that are interested in Haploflow are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- exploring viral genome assembly with variation graph tools☆20May 18, 2020Updated 5 years ago
- QuasiModo: Assessing viral genomic analysis methods on HCMV strain mixture☆12Sep 22, 2022Updated 3 years ago
- ProphAsm – a rapid computation of simplitigs directly from k-mer sets☆25Feb 17, 2023Updated 3 years ago
- An RNA virus strain-level identification tool for short reads.☆23Mar 18, 2026Updated last week
- Given a set of kmers (fasta format) and a set of sequences (fasta format), this tool will extract the sequences containing the kmers.☆21Oct 20, 2023Updated 2 years ago
- Wordpress hosting with auto-scaling on Cloudways • AdFully Managed hosting built for WordPress-powered businesses that need reliable, auto-scalable hosting. Cloudways SafeUpdates now available.
- Quasitools is a collection of tools for analysing viral quasispecies data.☆27Nov 25, 2021Updated 4 years ago
- Metalign: efficient alignment-based metagenomic profiling via containment min hash☆33Sep 12, 2023Updated 2 years ago
- Strain-level abundances estimation in metagenomic samples using variation graphs☆24Jan 29, 2023Updated 3 years ago
- Variant call verification☆16May 12, 2025Updated 10 months ago
- Screening Historical Events of Recombination in a Phylogeny via Ancestral Sequences☆11Sep 3, 2025Updated 6 months ago
- Full-length de novo viral haplotype reconstruction from noisy long reads☆21Nov 6, 2023Updated 2 years ago
- Space-efficient pseudoalignment with a colored de Bruijn graph☆52Mar 13, 2025Updated last year
- Translocator: local realignment and global remapping enabling accurate translocation detection using single-molecule sequencing long read…☆12Jan 22, 2020Updated 6 years ago
- viralFlye pipeline☆18Aug 12, 2024Updated last year
- DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- modular k-mer count matrix and Bloom filter construction for large read collections☆86Updated this week
- Haplotype-aware genome assembly toolkit☆30Jan 8, 2020Updated 6 years ago
- Strain-level haplotyping for metagenomes with short or long-reads.☆65Apr 10, 2025Updated 11 months ago
- Systematic ProtEin AnnotatoR☆19Sep 20, 2025Updated 6 months ago
- ☆62Sep 15, 2025Updated 6 months ago
- VGEA (Viral Genomes Easily Analyzed) is a pipeline for analysis of RNA virus next-generation sequencing data.☆20Sep 12, 2021Updated 4 years ago
- Olivar: towards automated variant aware primer design for multiplex tiled amplicon sequencing of pathogens☆38Jan 22, 2026Updated 2 months ago
- VStrains is a de novo approach for reconstructing strains from viral quasispecies.☆24Feb 22, 2026Updated last month
- Importing vg json graphs to Python data structures.☆12Nov 11, 2020Updated 5 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting with the flexibility to host WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Cloudways by DigitalOcean.
- a versatile toolkit for processing and analyzing diverse types of sequence data☆22Feb 18, 2026Updated last month
- Pipeline to automatically analyse SARS-CoV-2 Whole genome sequencing Illumina data obtained using EasySeq SARS-CoV-2/COVID-19 Whole Geno…☆15Jul 26, 2022Updated 3 years ago
- Paired reads mapping on de Bruijn graph☆13Jan 15, 2019Updated 7 years ago
- Cluster Investigation & Virus Epidemiology Tool☆50Jun 17, 2025Updated 9 months ago
- Accurate, resource-frugal and deterministic DNA sequence classifier.☆36Mar 4, 2026Updated 3 weeks ago
- MetagenOmic read Re-Assigner and abundance quantifier☆20Jan 31, 2025Updated last year
- Nanopore read de-multiplexer☆13Mar 25, 2020Updated 6 years ago
- ☆21Jan 23, 2026Updated 2 months ago
- ☆11Jul 3, 2022Updated 3 years ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click and start building anything your business needs.
- a toolset for fast DNA read set matching and assembly using a new type of reduced kmer☆37Aug 4, 2021Updated 4 years ago
- sensitive and precise assembly of short sequencing reads☆163Oct 11, 2024Updated last year
- Virus Protein Structural Analysis Toolkit☆13Sep 9, 2024Updated last year
- Phigaro is a scalable command-line tool for predicting phages and prophages☆52Jan 8, 2024Updated 2 years ago
- An accurate aligner of long reads to a variation graph, based on co-linear chaining☆35May 23, 2025Updated 10 months ago
- ultrafast taxonomic profiling and genome querying for metagenomic samples by abundance-corrected minhash.☆298Feb 3, 2026Updated last month
- De Bruijn graph representation in low memory☆35Jul 6, 2024Updated last year