TurakhiaLab / panmanLinks
Pangenome Mutation-Annotated Networks
☆35Updated 3 weeks ago
Alternatives and similar repositories for panman
Users that are interested in panman are comparing it to the libraries listed below
Sorting:
- Improved long-read assembly by preserving contained reads☆30Updated last year
- use variant nesting information to flter overlapping sites from vg deconstruct output☆31Updated 7 months ago
- lace up GFA files using panSN path name sub-ranges to coordinate the lacing☆14Updated 6 months ago
- Pangenome Sequence Naming: a backwards-compatible hack to simplify the identification of samples and haplotypes in pangenomes☆44Updated last year
- Pipeline to detect PAVs (presence/absence variations) in genome comparison using whole genome alignment.☆29Updated 7 years ago
- FastK based version of Merqury☆30Updated 2 weeks ago
- ☆19Updated last year
- Statistics and analysis for variation graphs☆48Updated last year
- Correcting errors in noisy long reads using variation graphs☆50Updated 3 years ago
- somatic SV calling on matched tumor-normal co-assembly graphs☆22Updated last year
- Create a pseudohaploid assembly from a partially resolved diploid assembly☆32Updated 6 years ago
- COsine SImilarity-based Genotyper using pangenomes☆25Updated 2 weeks ago
- ☆41Updated 8 months ago
- an interactive visualization and interpretation framework of reference-projected pangenome graphs☆37Updated 11 months ago
- Kmer Analysis of Pileups for Genotyping☆35Updated last week
- Domain based annotation of transposable elements☆21Updated 4 months ago
- ULTRA Locates Tandemly Repetitive Areas☆41Updated 3 months ago
- Tool for decomposition centromeric assemblies and long reads into monomers☆37Updated 3 years ago
- A module for improving the insertion sequences of structural variant calls☆33Updated 4 years ago
- R package and wrapper functions for identifying serial structural variations from genome assemblies☆29Updated last year
- ☆38Updated 4 months ago
- SV genotyper for long reads with a variation graph☆15Updated 5 months ago
- Tool for assessing/improving assembly quality in extra-long tandem repeats☆47Updated 4 years ago
- SV calling for diploid assemblies☆30Updated last year
- Unzip assembly graphs with Hi-C data and/or long reads.☆27Updated last year
- ☆39Updated 2 years ago
- A Hi-C scaffolding method☆22Updated 4 years ago
- ☆31Updated 9 months ago
- A web-based, interactive pangenome visualization tool☆21Updated 2 years ago
- Phasing reads with secondary alignments☆21Updated last year