Pangenome Mutation-Annotated Networks
☆45Jul 14, 2026Updated last month
Alternatives and similar repositories for panman
Users that are interested in panman are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Wastewater-Based Epidemiology using Phylogenetic Placements☆19Aug 20, 2026Updated last week
- a precise pangenome browser combining linear and graph-based pan-genome☆13Jul 16, 2024Updated 2 years ago
- ☆15Aug 16, 2025Updated last year
- Genotyping lots of samples with big pangenomes☆11Oct 30, 2025Updated 10 months ago
- ☆28Jul 13, 2026Updated last month
- GPUs on demand by Runpod - Special Offer Available • AdRun AI, ML, and HPC workloads on powerful cloud GPUs—without limits or wasted spend. Deploy GPUs in under a minute and pay by the second.
- A Rust-Based suite of utilities for ultra-fast genomic feature extraction☆46Dec 18, 2025Updated 8 months ago
- High throughput tool for tall and wide multiple sequence alignment.☆31Aug 9, 2026Updated 3 weeks ago
- PG-SCUnK mesure quality of Pan-Genome Graphs using Single Copy and Universal k-mers☆25Feb 16, 2026Updated 6 months ago
- A multiscale pangenome browser☆35Jul 18, 2026Updated last month
- ☆102Apr 22, 2024Updated 2 years ago
- Tool for fully-automated inference of species trees from raw genome assemblies☆50Updated this week
- Mumemto: multi-MUM and MEM finding across pangenomes☆136Jul 29, 2026Updated last month
- lace up GFA files using panSN path name sub-ranges to coordinate the lacing☆14Jul 30, 2025Updated last year
- Everything but the kitchen sink☆13Feb 6, 2025Updated last year
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- GFA visualization tool - Rust reimplementation of odgi viz☆15May 2, 2026Updated 3 months ago
- High throughput python tool for mining and analysis of gene duplications.☆17Jul 30, 2026Updated last month
- COsine SImilarity-based Genotyper using pangenomes☆36Aug 18, 2026Updated last week
- ☆49Jun 27, 2026Updated 2 months ago
- Identify long STRs, VNTRs, satellite DNA and other low-complexity regions in a genome☆100Jan 28, 2026Updated 7 months ago
- PanTax: Strain-level metagenomic profiling using pangenome graphs☆55Jun 10, 2026Updated 2 months ago
- ☆165Apr 13, 2026Updated 4 months ago
- ☆23Updated this week
- plane sweep filtering genome alignments☆24Jul 25, 2026Updated last month
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Variant Calling for the HPRC2☆16May 26, 2026Updated 3 months ago
- Distance-based Phylogenetic Placer☆23Jul 13, 2026Updated last month
- Inferring natural selection by comparative population genomic analysis across species☆28Oct 31, 2023Updated 2 years ago
- A toolkit for exploring regions of variation in pangenomes☆15Jun 12, 2026Updated 2 months ago
- Find and visualize rearrangements in DNA sequences☆56Jun 3, 2026Updated 2 months ago
- Catalogue of pairwise alignment algorithms and benchmarks☆25Jan 6, 2026Updated 7 months ago
- Genome size estimation from long read overlaps☆91Updated this week
- Multiple sequence alignment of long tandem repeats☆31Jun 23, 2026Updated 2 months ago
- Enumerating bubbles in pangenome graphs☆16Updated this week
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- an interactive visualization and interpretation framework of reference-projected pangenome graphs☆42Feb 15, 2025Updated last year
- Telomere local assembly, Improved whole genome polish, and Plastid assembly☆22Apr 25, 2025Updated last year
- Pairwise whole genome aligner☆244Jul 29, 2026Updated last month
- blastn2dotplots: multiple dot-plot visualizer☆29Sep 15, 2025Updated 11 months ago
- Detecting multi-genome synteny using minimizer graph mapping☆115Aug 20, 2026Updated last week
- Transfer HiFi read mappings from their own assembly contigs to a standard reference☆39Dec 30, 2025Updated 8 months ago
- Pangenome-based genome inference☆179Aug 18, 2026Updated last week