Markusjsommer / TD2Links
TD2
☆17Updated 3 months ago
Alternatives and similar repositories for TD2
Users that are interested in TD2 are comparing it to the libraries listed below
Sorting:
- ☆21Updated last week
- Telomere local assembly, Improved whole genome polish, and Plastid assembly☆21Updated 4 months ago
- SINE annotation tool for plant genomes☆18Updated last year
- Domain based annotation of transposable elements☆20Updated 4 months ago
- TGSFilter: An ultra-fast and efficient tool for long reads filtering and trimming☆23Updated last year
- A Hi-C scaffolding method☆22Updated 3 years ago
- A pipeline for genomic variant detection with genome assemblies at population scale☆27Updated 3 months ago
- ☆17Updated 8 months ago
- Consensus genome annotation using OMA☆26Updated 2 months ago
- Pipeline to detect PAVs (presence/absence variations) in genome comparison using whole genome alignment.☆29Updated 7 years ago
- use variant nesting information to flter overlapping sites from vg deconstruct output☆26Updated 3 months ago
- ☆28Updated last year
- Phasing reads with secondary alignments☆20Updated 9 months ago
- Scripts used to perform analyses in Rice et al. (2023)☆15Updated last year
- Infering ancestral synteny with hierarchical orthologous groups☆29Updated this week
- Genome alignment and synteny plots☆31Updated 2 years ago
- a tree splitting and pruning algorithm for retrieving single-copy orthologs from gene family trees☆26Updated 7 months ago
- Tool for decomposition centromeric assemblies and long reads into monomers☆35Updated 3 years ago
- Fast and flexible inference of the distribution of fitness effects (DFE), VCF-SFS parsing with ancestral allele and site-degeneracy annot…☆17Updated last month
- PSAURON is a machine learning model for rapid assessment of protein coding gene annotation☆39Updated 5 months ago
- Convert RepeatMasker ".out" file into a gff3 with colors!!!☆21Updated 5 years ago
- Inferring natural selection by comparative population genomic analysis across species☆25Updated last year
- FastK based version of Merqury☆28Updated 3 months ago
- ☆25Updated last month
- Convert Tandem Repeat Finder dat file output into gff3 format☆28Updated 8 months ago
- Construct and Analyze the North American Vitis pangenome☆24Updated 3 weeks ago
- Generate pan-gene sets, given a collection of genome assemblies and corresponding gene models.☆17Updated 3 weeks ago
- Integrate multiple genome assemblies into a pangenome graph☆35Updated 3 years ago
- Genome Assembly Validation via Inter-SUNK distances in ONT reads☆15Updated 2 years ago
- Simple tools for working with Hi-C data☆18Updated 6 years ago