TD2
☆41May 17, 2026Updated last month
Alternatives and similar repositories for TD2
Users that are interested in TD2 are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Ultra-efficient and sensitive method to search for Open Reading Frames in spliced genomes guided by reference annotation to maximize prot…☆44Mar 21, 2026Updated 3 months ago
- QuickProt: A Fast and Accurate Homology-Based Protein Annotation Tool for Non-Model Organisms to Advance Comparative Genomics☆23May 16, 2026Updated last month
- TransAnnot - a fast transcriptome annotation pipeline☆20Jan 22, 2025Updated last year
- PSAURON is a machine learning model for rapid assessment of protein coding gene annotation☆62May 17, 2026Updated last month
- Infering ancestral synteny with hierarchical orthologous groups☆38Oct 17, 2025Updated 8 months ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Tree reconstruction of ancestry using incomplete lineage sorting☆11Jan 9, 2026Updated 5 months ago
- Methylation analysis pipeline for genome graph☆15May 25, 2025Updated last year
- This is the standalone version of the EviAnn pipeline☆152Jun 24, 2026Updated last week
- ANI based satellite annotation☆26Jun 9, 2026Updated 3 weeks ago
- lace up GFA files using panSN path name sub-ranges to coordinate the lacing☆14Jul 30, 2025Updated 11 months ago
- PanEffect is a JavaScript framework to explore variant effects across a pangenome. The tool has two views that allows a user to (1) expl…☆13Jan 30, 2024Updated 2 years ago
- ☆16Apr 25, 2019Updated 7 years ago
- FastK based version of Merqury☆32Jan 19, 2026Updated 5 months ago
- a tree splitting and pruning algorithm for retrieving single-copy orthologs from gene family trees☆31Feb 23, 2026Updated 4 months ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- PG-SCUnK mesure quality of Pan-Genome Graphs using Single Copy and Universal k-mers☆23Feb 16, 2026Updated 4 months ago
- Software for clustering de novo assembled transcripts and counting overlapping reads☆78Feb 11, 2022Updated 4 years ago
- Robust individual and aggregate checksums for nucleotide sequences☆17Mar 3, 2026Updated 4 months ago
- A software suite for accurate identification, annotation, translation, and feature characterization of annotate transcripts.☆23Sep 1, 2021Updated 4 years ago
- Pangenome Mutation-Annotated Networks☆45Jun 6, 2026Updated 3 weeks ago
- Domain based annotation of transposable elements☆23Oct 8, 2025Updated 8 months ago
- Fast long-read mapper and whole-genome aligner (accelerated version of minimap2)☆60Jan 7, 2026Updated 5 months ago
- Telomere local assembly, Improved whole genome polish, and Plastid assembly☆22Apr 25, 2025Updated last year
- ☆15Jul 21, 2022Updated 3 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Genotyping lots of samples with big pangenomes☆11Oct 30, 2025Updated 8 months ago
- Compares pangenome graphs by calculating the segmentation distance between two GFA (Graphical Fragment Assembly) files.☆13Apr 28, 2026Updated 2 months ago
- COsine SImilarity-based Genotyper using pangenomes☆36Jun 4, 2026Updated last month
- ☆15Dec 22, 2025Updated 6 months ago
- ☆17Updated this week
- A toolkit for exploring regions of variation in pangenomes☆15Jun 12, 2026Updated 3 weeks ago
- Invertory of TE-gene isoforms☆14Sep 18, 2023Updated 2 years ago
- ☆17Jun 17, 2026Updated 2 weeks ago
- source code for EVM☆125Nov 29, 2024Updated last year
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- OpenGL Powered Pretext Contact Map Viewer☆63May 31, 2026Updated last month
- Genome Assembly Validation via Inter-SUNK distances in ONT reads☆16Feb 20, 2023Updated 3 years ago
- FastOMA is a scalable software package to infer orthology relationship.☆99May 15, 2026Updated last month
- A telomere-to-telomere toolkit for gap-free genome assembly and centromeric repeat identification☆176Jun 23, 2026Updated last week
- PoSeiDon: positive selection detection and recombination analysis pipeline☆40Sep 22, 2025Updated 9 months ago
- ☆45Oct 29, 2022Updated 3 years ago
- Identify and find telomeres, or telomeric repeats in a genome.☆167Nov 24, 2025Updated 7 months ago