TD2
☆34Jan 14, 2026Updated 2 months ago
Alternatives and similar repositories for TD2
Users that are interested in TD2 are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Ultra-efficient and sensitive method to search for Open Reading Frames in spliced genomes guided by reference annotation to maximize prot…☆43Updated this week
- PSAURON is a machine learning model for rapid assessment of protein coding gene annotation☆54Dec 11, 2025Updated 3 months ago
- Infering ancestral synteny with hierarchical orthologous groups☆38Oct 17, 2025Updated 5 months ago
- Tree reconstruction of ancestry using incomplete lineage sorting☆11Jan 9, 2026Updated 2 months ago
- Methylation analysis pipeline for genome graph☆15May 25, 2025Updated 9 months ago
- This is the standalone version of the EviAnn pipeline☆142Mar 13, 2026Updated last week
- ANI based satellite annotation☆26Mar 2, 2026Updated 3 weeks ago
- TransAnnot - a fast transcriptome annotation pipeline☆20Jan 22, 2025Updated last year
- ☆16Apr 25, 2019Updated 6 years ago
- QuickProt: A Fast and Accurate Homology-Based Protein Annotation Tool for Non-Model Organisms to Advance Comparative Genomics☆18Jan 12, 2026Updated 2 months ago
- lace up GFA files using panSN path name sub-ranges to coordinate the lacing☆14Jul 30, 2025Updated 7 months ago
- PanEffect is a JavaScript framework to explore variant effects across a pangenome. The tool has two views that allows a user to (1) expl…☆13Jan 30, 2024Updated 2 years ago
- FastK based version of Merqury☆32Jan 19, 2026Updated 2 months ago
- a tree splitting and pruning algorithm for retrieving single-copy orthologs from gene family trees☆29Feb 23, 2026Updated last month
- PG-SCUnK mesure quality of Pan-Genome Graphs using Single Copy and Universal k-mers☆23Feb 16, 2026Updated last month
- Pangenome Mutation-Annotated Networks☆38Feb 13, 2026Updated last month
- Domain based annotation of transposable elements☆22Oct 8, 2025Updated 5 months ago
- Fast long-read mapper and whole-genome aligner (accelerated version of minimap2)☆58Jan 7, 2026Updated 2 months ago
- Telomere local assembly, Improved whole genome polish, and Plastid assembly☆22Apr 25, 2025Updated 10 months ago
- ☆15Jul 21, 2022Updated 3 years ago
- Genotyping lots of samples with big pangenomes☆11Oct 30, 2025Updated 4 months ago
- COsine SImilarity-based Genotyper using pangenomes☆31Feb 13, 2026Updated last month
- Compares pangenome graphs by calculating the segmentation distance between two GFA (Graphical Fragment Assembly) files.☆13Oct 1, 2025Updated 5 months ago
- Software for clustering de novo assembled transcripts and counting overlapping reads☆76Feb 11, 2022Updated 4 years ago
- ☆14Dec 22, 2025Updated 3 months ago
- ☆16Mar 2, 2026Updated 3 weeks ago
- A toolkit for exploring regions of variation in pangenomes☆14Feb 14, 2026Updated last month
- Invertory of TE-gene isoforms☆14Sep 18, 2023Updated 2 years ago
- source code for EVM☆122Nov 29, 2024Updated last year
- OpenGL Powered Pretext Contact Map Viewer☆56Mar 16, 2026Updated last week
- A telomere-to-telomere toolkit for gap-free genome assembly and centromeric repeat identification☆166Oct 29, 2025Updated 4 months ago
- Genome Assembly Validation via Inter-SUNK distances in ONT reads☆15Feb 20, 2023Updated 3 years ago
- PoSeiDon: positive selection detection and recombination analysis pipeline☆39Sep 22, 2025Updated 6 months ago
- ☆45Oct 29, 2022Updated 3 years ago
- ☆33Jul 9, 2024Updated last year
- somatic SV calling on matched tumor-normal co-assembly graphs☆22Aug 1, 2024Updated last year
- ☆21Jan 13, 2026Updated 2 months ago
- HELIANO is a software for detection and classification of Helitron-like elements.☆33Jun 10, 2025Updated 9 months ago
- ksrates is a tool to position whole-genome duplications relative to speciation events using substitution-rate-adjusted mixed paralog-orth…☆23Jan 21, 2026Updated 2 months ago