Alternatives and similar repositories for TD2

Users that are interested in TD2 are comparing it to the libraries listed below

• davidebolo1993 / cosigt
  ☆20Updated last week
• kavonrtep / dante
  Domain based annotation of transposable elements
  ☆19Updated last month
• at-cg / RAFT
  ☆25Updated 10 months ago
• dfguan / pin_hic
  A Hi-C scaffolding method
  ☆23Updated 3 years ago
• wtsi-hpag / scanPAV
  Pipeline to detect PAVs (presence/absence variations) in genome comparison using whole genome alignment.
  ☆29Updated 7 years ago
• clemgoub / rm2gff3
  Convert RepeatMasker ".out" file into a gff3 with colors!!!
  ☆21Updated 4 years ago
• Kirovez / pyTanFinder
  Python scripts to run tandem repeat finder program (Benson, 1999) and parse the results
  ☆12Updated 6 years ago
• DessimozLab / OMAnnotator
  Consensus genome annotation using OMA
  ☆24Updated this week
• harris-2374 / THEx
  Tree House Explorer (THEx) is a novel genome browser for exploring phylogenetic and genomic data in one succinct place.
  ☆14Updated last year
• NBISweden / TransposonPSI
  TransposonPSI involves a PSI-blast search of a protein or nucleotide sequence against a set of profiles of proteins corresponding to majo…
  ☆13Updated 5 years ago
• almeidasilvaf / doubletrouble
  An R package to identify and classify duplicated genes from whole-genome protein sequence data
  ☆26Updated 3 months ago
• A-J-F-Mackintosh / syngraph
  Toolkit for evolutionary analyses of linkage groups
  ☆31Updated 11 months ago
• jydu / maffilter
  The MafFilter genome alignment processor
  ☆18Updated last month
• schatzlab / pseudohaploid
  Create a pseudohaploid assembly from a partially resolved diploid assembly
  ☆32Updated 5 years ago
• PacificBiosciences / pbipa
  Improved Phased Assembler
  ☆28Updated 3 years ago
• SandraLouise / SVJedi-graph
  SV genotyper for long reads with a variation graph
  ☆12Updated 3 months ago
• sanger-tol / yahs
  Yet another Hi-C scaffolding tool
  ☆20Updated 8 months ago
• simonhmartin / asynt
  Genome alignment and synteny plots
  ☆30Updated 2 years ago
• linguoliang / puzzle-hi-c
  ☆16Updated 6 months ago
• WarrenLab / chicken-pangenome-paper
  Scripts used to perform analyses in Rice et al. (2023)
  ☆15Updated last year
• andreaminio / HaploSync
  Tools for haplotype-wise reconstruction of pseudomolecules
  ☆20Updated 8 months ago
• jmsong2 / GenomeSyn
  We developed GenomeSyn as a new tool for constructing and visualizing genome synteny, its novel design and implementation can serve as a …
  ☆27Updated 3 years ago
• kavonrtep / dante_ltr
  ☆10Updated last month
• KolmogorovLab / hapdiff
  SV calling for diploid assemblies
  ☆27Updated last year
• moold / paf2dotplot
  Draw a dot plot from a paf alignment
  ☆30Updated 2 months ago
• mkirsche / Iris
  A module for improving the insertion sequences of structural variant calls
  ☆30Updated 3 years ago
• Wenfei-Xian / TIPP
  Telomere local assembly, Improved whole genome polish, and Plastid assembly
  ☆18Updated 2 months ago
• WHops / NAHRwhals
  R package and wrapper functions for identifying serial structural variations from genome assemblies
  ☆27Updated 9 months ago
• schatzlab / Col-CEN
  Resources for the Col-CEN reference genome assemblies
  ☆11Updated 3 years ago
• shingocat / syntenyPlotByR
  plot genome alignment synteny
  ☆21Updated 5 years ago