Markusjsommer / TD2Links
TD2
☆29Updated 3 weeks ago
Alternatives and similar repositories for TD2
Users that are interested in TD2 are comparing it to the libraries listed below
Sorting:
- Infering ancestral synteny with hierarchical orthologous groups☆36Updated 2 months ago
- Consensus genome annotation using OMA☆31Updated 6 months ago
- PSAURON is a machine learning model for rapid assessment of protein coding gene annotation☆49Updated 2 weeks ago
- We developed GenomeSyn as a new tool for constructing and visualizing genome synteny, its novel design and implementation can serve as a …☆31Updated 3 years ago
- A module for improving the insertion sequences of structural variant calls☆33Updated 4 years ago
- FastK based version of Merqury☆29Updated 3 months ago
- Yet another Hi-C scaffolding tool☆22Updated last year
- COsine SImilarity-based Genotyper using pangenomes☆24Updated last week
- SV genotyper for long reads with a variation graph☆15Updated 4 months ago
- Pipeline to detect PAVs (presence/absence variations) in genome comparison using whole genome alignment.☆29Updated 7 years ago
- Domain based annotation of transposable elements☆21Updated 2 months ago
- An R package to identify and classify duplicated genes from whole-genome protein sequence data☆30Updated 3 months ago
- use variant nesting information to flter overlapping sites from vg deconstruct output☆31Updated 6 months ago
- Convert RepeatMasker ".out" file into a gff3 with colors!!!☆24Updated 5 years ago
- VACmap: a long-read aligner specifically designed for complex structural variation discovery☆38Updated 2 weeks ago
- A tool for recovering synteny blocks from multiple alignment☆32Updated 4 years ago
- ☆30Updated last year
- SV calling for diploid assemblies☆30Updated last year
- Tool for decomposition centromeric assemblies and long reads into monomers☆37Updated 3 years ago
- Generate pan-gene sets, given a collection of genome assemblies and corresponding gene models.☆19Updated this week
- A genome annotation pipeline that use short and long sequencing reads alignments from animal genomes☆30Updated last year
- R package and wrapper functions for identifying serial structural variations from genome assemblies☆28Updated last year
- scripts to parse and analyse MCScanX collinearity output☆33Updated 5 years ago
- Chromosome-level synteny plotting using orthologous regions☆31Updated last year
- An R package to infer and analyze synteny networks from protein sequences☆36Updated 5 months ago
- TGSFilter: An ultra-fast and efficient tool for long reads filtering and trimming☆26Updated last year
- Snakemake pipeline to analyze transposable element 'omics data.☆29Updated last month
- ☆19Updated last year
- ☆29Updated 2 years ago
- ☆31Updated 6 years ago