RiversDong / GageTrackerLinks
tool for dating gene age by micro- and macro-synteny with high speed and accuracy
☆12Updated last month
Alternatives and similar repositories for GageTracker
Users that are interested in GageTracker are comparing it to the libraries listed below
Sorting:
- Infering ancestral synteny with hierarchical orthologous groups☆24Updated 3 weeks ago
- Diamond2GO is a set of tools that can rapidly assign Gene Ontology (GO) terms and perform functional enrichment for large-scale functiona…☆21Updated 3 weeks ago
- An R package to infer and analyze synteny networks from protein sequences☆30Updated last month
- CAAStools is a bioinformatics toolbox that allows the user to identify and validate CAAS on MSA of orthologous proteins.☆21Updated last year
- a tree splitting and pruning algorithm for retrieving single-copy orthologs from gene family trees☆26Updated 6 months ago
- PhyloBayes: phylogenetic reconstruction using infinite mixtures (CAT and CAT-GTR) -- serial version (for MPI, see pbmpi.git)☆15Updated 3 years ago
- Tool for fully-automated inference of species trees from raw genome assemblies☆38Updated 3 months ago
- ☆26Updated 4 years ago
- Improved Inference of Ortholog Groups using Hidden Markov Models☆37Updated 6 months ago
- Taxon-aware analysis of clustered protein sequences☆31Updated last year
- Genome alignment and synteny plots☆31Updated 2 years ago
- scripts to parse and analyse MCScanX collinearity output☆32Updated 5 years ago
- R package for comparison of synteny conservation at the genome-wide scale.☆14Updated last year
- ☆16Updated 2 months ago
- A Python package for testing evolutionary hypotheses in genome-wide approaches.☆31Updated 4 years ago
- a broadly applicable tool for automated gene identification and retrieval☆32Updated 8 months ago
- An R package to identify and classify duplicated genes from whole-genome protein sequence data☆27Updated 3 weeks ago
- We developed GenomeSyn as a new tool for constructing and visualizing genome synteny, its novel design and implementation can serve as a …☆29Updated 3 years ago
- ☆42Updated last year
- Automatic evaluation of HGTs☆30Updated 7 months ago
- Consensus genome annotation using OMA☆26Updated 2 months ago
- PREQUAL: a pre-alignment quality filter for comparative sequence analyses☆32Updated 3 years ago
- Gennome annotation scripts for the crickets Gryllus bimaculatus and Laupala kohalensis.☆13Updated 3 years ago
- Genome-wide gene gain/loss mapping tool using DTL(Duplication-Transfer-Loss) reconciliation method☆16Updated 2 years ago
- Robust identification of orthologous Synteny with the Orthology Index☆29Updated last week
- Tools to process OrthoFinder output: Calculate the most common gene name of an orthogroup by majority vote and create plots analogous to …☆19Updated last year
- Methods for finding associations between phenotypic and genomic differences between species using the Forward Genomics framework☆24Updated 2 years ago
- Wrapper script to concatenate, align, and construct phylogenetic trees of BUSCOs☆20Updated 5 years ago
- ☆22Updated 11 years ago
- A script that parses the OrthoFinder output and keeps only the orthogroups that meet specific criteria☆18Updated 4 years ago