RiversDong / GageTracker
tool for dating gene age by micro- and macro-synteny with high speed and accuracy
☆10Updated 5 months ago
Alternatives and similar repositories for GageTracker:
Users that are interested in GageTracker are comparing it to the libraries listed below
- Consensus genome annotation using OMA☆23Updated 4 months ago
- Infering ancestral synteny with hierarchical orthologous groups☆14Updated this week
- Better Alignments with Translated HMMER☆19Updated this week
- A comparative genome scaffolding tool☆17Updated 6 years ago
- a tree splitting and pruning algorithm for retrieving single-copy orthologs from gene family trees☆25Updated 2 months ago
- Pipeline to detect PAVs (presence/absence variations) in genome comparison using whole genome alignment.☆29Updated 7 years ago
- Genome alignment and synteny plots☆30Updated last year
- An R package to infer and analyze synteny networks from protein sequences☆29Updated 4 months ago
- Fast long-read mapper and whole-genome aligner (accelerated version of minimap2)☆31Updated 3 months ago
- Nucmer from Mummer3 followed by ggplot for nicer and more customisable genome alignment plots.☆11Updated 4 years ago
- a broadly applicable tool for automated gene identification and retrieval☆31Updated 4 months ago
- Yet another Hi-C scaffolding tool☆19Updated 6 months ago
- profile the repeat landscape in a genome☆15Updated 10 years ago
- Hapo-G is a tool that aims to improve the quality of genome assemblies by polishing the consensus with accurate reads.☆25Updated last year
- ☆16Updated 2 weeks ago
- ☆20Updated 8 months ago
- We developed GenomeSyn as a new tool for constructing and visualizing genome synteny, its novel design and implementation can serve as a …☆25Updated 3 years ago
- transposable element typing pipeline☆17Updated last year
- Generating UTRs from SHort Reads☆12Updated 4 years ago
- The Vertebrate Genomes Project Mitogenome Assembly Pipeline☆18Updated 2 years ago
- Identification of conserved non-coding sequences in plants☆17Updated 3 months ago
- Calculate the dn/ds (also pn and ps) value of cds☆13Updated 4 years ago
- que paquete☆9Updated 9 months ago
- Simple tools for working with Hi-C data☆17Updated 6 years ago
- Prefix-renaming FASTA records really fast.☆17Updated 10 months ago
- R package for comparison of synteny conservation at the genome-wide scale.☆14Updated 10 months ago
- CAMSA: a tool for Comparative Analysis and Merging of Scaffold Assemblies☆24Updated 5 years ago
- MEMO: MEM-based pangenome indexing for k-mer queries☆18Updated 10 months ago
- ☆20Updated 3 years ago
- Improvement of Long Read Assemblies (ILRA) is a pipeline to help in the post assembly process (finishing) by cleaning and merging contigs…☆13Updated 5 months ago