Dee-chen / Tree2gdLinks
☆45Updated 3 years ago
Alternatives and similar repositories for Tree2gd
Users that are interested in Tree2gd are comparing it to the libraries listed below
Sorting:
- wgd v2: a suite of tools to uncover and date ancient polyploidy and whole-genome duplication☆37Updated 9 months ago
- SyntenyFinder contains a collection of scripts for performing and visualizing macrosynteny analyses. It supports annotated chromosome-lev…☆33Updated 10 months ago
- ☆32Updated 8 months ago
- Multi-genome synteny block visualization tool☆49Updated last month
- Plant genome assembly and annotation pipeline using snakemake☆48Updated 6 months ago
- A snakemake workflow for de novo genome assembly. It produces chromosome-scale primary/phased assemblies complete with organelles (mitoch…☆31Updated 6 months ago
- A python script for finding telomeric repeats (TTAGGG/CCCTAA) in FASTA files☆35Updated 3 years ago
- A shiny application to visualize MCscan result☆37Updated 3 years ago
- SCORPiOs is a synteny-guided gene tree correction pipeline for clades that have undergone a whole-genome duplication event.☆22Updated last year
- Robust identification of orthologous Synteny with the Orthology Index☆35Updated last month
- ☆21Updated last year
- Resistify is a program which rapidly identifies and classifies plant resistance genes from protein sequences. It is designed to be lightw…☆40Updated last week
- BITACORA: A Bioinformatics tool for gene family annotation☆49Updated 6 months ago
- A tool for quick and accurate calculation of syntenic diversity.☆42Updated 2 months ago
- A quick user guide for de novo transposable element (TE) library generation and TE screening. Utilising; the Extensive de novo TE Annotat…☆27Updated 3 years ago
- Centromics: visualing centromeres with multiple omics data☆20Updated last year
- ☆41Updated 2 years ago
- a Semi-automated pipeline for assembling T2T genome☆24Updated last month
- ☆29Updated last year
- Genome Annotation Pipeline☆42Updated last year
- ☆84Updated this week
- Automated pipeline for running CoalHMM☆13Updated 2 years ago
- MCMCtreeR: A package to estimate distribution values for temporal node constraints and prepare input files for MCMCtree☆45Updated 6 years ago
- ☆31Updated 11 months ago
- A genome assembly assessment pipeline.☆37Updated 2 years ago
- MITE Tracker: An accurate approach to identify miniature inverted-repeat transposable elements in large genomes☆20Updated last year
- HELIANO is a software for detection and classification of Helitron-like elements.☆31Updated 5 months ago
- Toolkit for evolutionary analyses of linkage groups☆32Updated last year
- Centromics: visualing centromeres with multiple omics data☆24Updated 9 months ago
- Python script calculating transposable element density for all genes in a genome. Publication: https://mobilednajournal.biomedcentral.com…☆35Updated last year