Dee-chen / Tree2gdLinks
☆45Updated 3 years ago
Alternatives and similar repositories for Tree2gd
Users that are interested in Tree2gd are comparing it to the libraries listed below
Sorting:
- wgd v2: a suite of tools to uncover and date ancient polyploidy and whole-genome duplication☆37Updated 9 months ago
- A shiny application to visualize MCscan result☆37Updated 3 years ago
- SyntenyFinder contains a collection of scripts for performing and visualizing macrosynteny analyses. It supports annotated chromosome-lev…☆33Updated 10 months ago
- Genome Annotation Pipeline☆39Updated last year
- Multi-genome synteny block visualization tool☆47Updated last month
- ☆41Updated 2 years ago
- ☆32Updated 7 months ago
- Plant genome assembly and annotation pipeline using snakemake☆48Updated 6 months ago
- a Semi-automated pipeline for assembling T2T genome☆24Updated last month
- BITACORA: A Bioinformatics tool for gene family annotation☆49Updated 5 months ago
- A python script for finding telomeric repeats (TTAGGG/CCCTAA) in FASTA files☆34Updated 3 years ago
- Python script calculating transposable element density for all genes in a genome. Publication: https://mobilednajournal.biomedcentral.com…☆34Updated last year
- A genome assembly assessment pipeline.☆37Updated last year
- A quick user guide for de novo transposable element (TE) library generation and TE screening. Utilising; the Extensive de novo TE Annotat…☆27Updated 2 years ago
- Convergent substitution detection tool based on the PCOC model☆31Updated 3 years ago
- Centromics: visualing centromeres with multiple omics data☆20Updated last year
- TSEBRA: Transcript Selector for BRAKER☆48Updated this week
- use long sequenced reads to close gaps in assemblies☆39Updated 7 years ago
- Resistify is a program which rapidly identifies and classifies plant resistance genes from protein sequences. It is designed to be lightw…☆40Updated last week
- ☆33Updated 4 years ago
- A tool for quick and accurate calculation of syntenic diversity.☆42Updated last month
- Identification of errors in draft genome assemblies with single-base pair resolution for quality assessment and improvement☆72Updated 2 months ago
- HELIANO is a software for detection and classification of Helitron-like elements.☆31Updated 5 months ago
- ☆21Updated last year
- A snakemake workflow for de novo genome assembly. It produces chromosome-scale primary/phased assemblies complete with organelles (mitoch…☆30Updated 6 months ago
- SCORPiOs is a synteny-guided gene tree correction pipeline for clades that have undergone a whole-genome duplication event.☆22Updated last year
- ☆39Updated 3 months ago
- ☆43Updated last year
- Robust identification of orthologous Synteny with the Orthology Index☆34Updated 3 weeks ago
- Toolkit for evolutionary analyses of linkage groups☆32Updated last year