jessicabonnie / dandd
Tool to estimate deltas for sequence sets and answer questions about relative contribution
☆21Updated 8 months ago
Related projects ⓘ
Alternatives and complementary repositories for dandd
- recompute GFA link overlaps☆25Updated 2 years ago
- extract MSAs from genome variation graphs☆33Updated 4 years ago
- Population-scale detection of non-reference sequence variants using colored de Bruijn Graphs☆24Updated 6 months ago
- building a human pangenome from the HPRCy1v2 genbank accessioned assemblies☆13Updated last year
- use variant nesting information to flter overlapping sites from vg deconstruct output☆23Updated 4 months ago
- Differential k-mer analysis☆33Updated 9 months ago
- ☆10Updated 4 years ago
- Kmer Analysis of Pileups for Genotyping☆18Updated last week
- convert variation graph alignments to coverage maps over nodes☆21Updated this week
- ☆15Updated 4 years ago
- ☆18Updated 2 months ago
- Kmer based genotyper for short reads.☆23Updated 3 years ago
- Long read aligner for cyclic and acyclic pangenome graphs☆35Updated 10 months ago
- CAMSA: a tool for Comparative Analysis and Merging of Scaffold Assemblies☆24Updated 4 years ago
- Scaffolding with assembly likelihood optimization☆20Updated 3 years ago
- Scaffolding with Ultralong Reads☆14Updated 3 years ago
- GFA insert into GenomicSQLite☆48Updated 3 years ago
- ☆16Updated 2 years ago
- Extracts subgraphs or components from a graph in GFA format☆22Updated 5 months ago
- This is a library C/Python/CLI for working with TAF (.taf,.taf.gz) and MAF (.maf) alignment files☆24Updated 3 months ago
- JTK -- a regional diploid genome assembler☆23Updated 3 weeks ago
- A module for improving the insertion sequences of structural variant calls☆29Updated 3 years ago
- pangenome analyses for complete genomes of great apes (and gibbon)☆16Updated 3 weeks ago
- Hidden Markov Model based Copy number caller☆20Updated 2 weeks ago
- Code to create a PRG from a Multiple Sequence Alignment file☆22Updated 7 months ago
- Long-read aligner to pangenome graphs☆25Updated 5 months ago
- Tandem Repeats Finder: a program to analyze DNA sequences☆14Updated 2 years ago
- Rust wrapper for the next generation (still currently in C++)☆20Updated last week
- Statistics and analysis for variation graphs☆31Updated 3 weeks ago
- ☆16Updated 3 years ago