jessicabonnie / danddLinks
Tool to estimate deltas for sequence sets and answer questions about relative contribution
☆21Updated 9 months ago
Alternatives and similar repositories for dandd
Users that are interested in dandd are comparing it to the libraries listed below
Sorting:
- extract MSAs from genome variation graphs☆34Updated 5 years ago
- syncmer graphs, and perhaps other sorts of sequence graphs☆24Updated this week
- Extracts subgraphs or components from a graph in GFA format☆24Updated last year
- Long-read aligner to pangenome graphs☆29Updated last year
- ☆26Updated 4 years ago
- Differential k-mer analysis☆39Updated last year
- base-accurate DNA sequence alignments using edlib and mashmap2☆32Updated 4 years ago
- PAF (pairwise alignment format) validator based on extended CIGAR strings☆15Updated 4 months ago
- ☆14Updated 2 years ago
- Scaffolding with assembly likelihood optimization☆21Updated 5 years ago
- Long read aligner for cyclic and acyclic pangenome graphs☆40Updated 2 years ago
- Transfer HiFi read mappings from their own assembly contigs to a standard reference☆28Updated last week
- A simple tool to fix PacBio fasta/q that was not properly split into subreads☆16Updated 4 years ago
- Population-scale detection of non-reference sequence variants using colored de Bruijn Graphs☆26Updated last year
- General purpose utility related to GAF files☆29Updated last month
- This is a library C/Python/CLI for working with TAF (.taf,.taf.gz) and MAF (.maf) alignment files☆29Updated 4 months ago
- A novel method for sequence similarity estimation☆28Updated last year
- Kmer based genotyper for short reads.☆23Updated 4 years ago
- Prefix-renaming FASTA records really fast.☆17Updated last year
- Lift-over alignments from variant-aware references☆34Updated 2 years ago
- transposable element typing pipeline☆19Updated last year
- recompute GFA link overlaps☆25Updated 3 years ago
- R package and wrapper functions for identifying serial structural variations from genome assemblies☆28Updated last year
- Fast long-read mapper and whole-genome aligner (accelerated version of minimap2)☆36Updated last month
- A framework for extracting telomeric reads from single-molecule sequencing experiments, describing their sequence variation and motifs, a…☆16Updated last year
- GFA insert into GenomicSQLite☆49Updated 4 years ago
- ☆28Updated 8 months ago
- Fast in-silico normalization algorithm for NGS data☆23Updated 4 years ago
- ☆45Updated last month
- convert variation graph alignments to coverage maps over nodes☆26Updated last month