jessicabonnie / danddLinks
Tool to estimate deltas for sequence sets and answer questions about relative contribution
☆21Updated 2 months ago
Alternatives and similar repositories for dandd
Users that are interested in dandd are comparing it to the libraries listed below
Sorting:
- extract MSAs from genome variation graphs☆33Updated 4 years ago
- Population-scale detection of non-reference sequence variants using colored de Bruijn Graphs☆24Updated last year
- syncmer graphs, and perhaps other sorts of sequence graphs☆20Updated 2 months ago
- recompute GFA link overlaps☆25Updated 2 years ago
- Hidden Markov Model based Copy number caller☆20Updated 7 months ago
- General purpose utility related to GAF files☆28Updated last week
- Kmer based genotyper for short reads.☆23Updated 3 years ago
- Phase reads, assemble haplotypes and detect SVs☆19Updated 4 years ago
- Pangenome Graph Variation Format (PGVF)☆19Updated 4 years ago
- Lift-over alignments from variant-aware references☆34Updated 2 years ago
- R package and wrapper functions for identifying serial structural variations from genome assemblies☆28Updated 8 months ago
- convert variation graph alignments to coverage maps over nodes☆24Updated 4 months ago
- GFA insert into GenomicSQLite☆49Updated 3 years ago
- A simple tool to fix PacBio fasta/q that was not properly split into subreads☆15Updated 3 years ago
- ☆32Updated 2 years ago
- A tool set to assess the quality of the per read phasing and reduce the errors.☆12Updated 4 years ago
- Scaffolding with assembly likelihood optimization☆22Updated 4 years ago
- Contains the description of a file format to store kmers and associated values☆32Updated 2 years ago
- Extracts subgraphs or components from a graph in GFA format☆23Updated 6 months ago
- ☆14Updated last year
- FastRemap, a C++ tool for quickly remapping reads between genome assemblies based on the commonly used CrossMap tool. Link to paper: http…☆26Updated 2 years ago
- use variant nesting information to flter overlapping sites from vg deconstruct output☆26Updated 11 months ago
- JTK -- a regional diploid genome assembler☆24Updated 7 months ago
- building a human pangenome from the HPRCy1v2 genbank accessioned assemblies☆14Updated 2 years ago
- ☆26Updated 3 years ago
- Long read aligner for cyclic and acyclic pangenome graphs☆36Updated last year
- Method to optimally select samples for validation and resequencing☆27Updated 4 years ago
- Convert HAL to VG☆22Updated 9 months ago
- A long-read analysis toolbox for cancer and population genomics☆23Updated 3 months ago
- ☆16Updated 4 months ago