jessicabonnie / dandd
Tool to estimate deltas for sequence sets and answer questions about relative contribution
☆21Updated last week
Alternatives and similar repositories for dandd:
Users that are interested in dandd are comparing it to the libraries listed below
- General purpose utility related to GAF files☆22Updated last month
- recompute GFA link overlaps☆25Updated 2 years ago
- Contains the description of a file format to store kmers and associated values☆32Updated 2 years ago
- ☆15Updated 4 years ago
- A k-mer search engine for all Sequence Read Archive public accessions☆20Updated 4 months ago
- MEMO: MEM-based pangenome indexing for k-mer queries☆18Updated 8 months ago
- Kmer based genotyper for short reads.☆23Updated 3 years ago
- R package and wrapper functions for identifying serial structural variations from genome assemblies☆26Updated 5 months ago
- Hidden Markov Model based Copy number caller☆20Updated 4 months ago
- Minimizer-based assembly scaffolding and mapping using long reads☆37Updated 4 months ago
- Population-scale detection of non-reference sequence variants using colored de Bruijn Graphs☆24Updated 10 months ago
- Scaffolding with assembly likelihood optimization☆20Updated 4 years ago
- Extracts subgraphs or components from a graph in GFA format☆23Updated 3 months ago
- extract MSAs from genome variation graphs☆33Updated 4 years ago
- PAF (pairwise alignment format) validator based on extended CIGAR strings☆14Updated 5 months ago
- ☆26Updated 3 years ago
- A long-read analysis toolbox for cancer and population genomics☆21Updated 2 weeks ago
- Code to create a PRG from a Multiple Sequence Alignment file☆23Updated 11 months ago
- Fast in-silico normalization algorithm for NGS data☆22Updated 3 years ago
- Coronavirus (SARS-Cov-2) sequencing analysis☆10Updated 3 years ago
- pangenome analyses for complete genomes of great apes (and gibbon)☆17Updated 4 months ago
- convert variation graph alignments to coverage maps over nodes☆23Updated last month
- JTK -- a regional diploid genome assembler☆24Updated 4 months ago
- Long read aligner for cyclic and acyclic pangenome graphs☆36Updated last year
- Haplotype-aware genome assembly toolkit☆29Updated 5 years ago
- Genome Assembly 102☆14Updated last month
- Convert HAL to VG☆21Updated 6 months ago
- This is a library C/Python/CLI for working with TAF (.taf,.taf.gz) and MAF (.maf) alignment files☆25Updated 2 months ago
- use variant nesting information to flter overlapping sites from vg deconstruct output☆26Updated 8 months ago
- ☆16Updated 3 years ago