jessicabonnie / danddLinks
Tool to estimate deltas for sequence sets and answer questions about relative contribution
☆21Updated 3 months ago
Alternatives and similar repositories for dandd
Users that are interested in dandd are comparing it to the libraries listed below
Sorting:
- ☆26Updated 3 years ago
- recompute GFA link overlaps☆25Updated 2 years ago
- Differential k-mer analysis☆36Updated last year
- extract MSAs from genome variation graphs☆33Updated 4 years ago
- This is a library C/Python/CLI for working with TAF (.taf,.taf.gz) and MAF (.maf) alignment files☆27Updated 7 months ago
- syncmer graphs, and perhaps other sorts of sequence graphs☆20Updated 3 months ago
- General purpose utility related to GAF files☆28Updated last week
- Extracts subgraphs or components from a graph in GFA format☆23Updated 7 months ago
- Kmer based genotyper for short reads.☆23Updated 3 years ago
- Long-read aligner to pangenome graphs☆26Updated last year
- GFA insert into GenomicSQLite☆49Updated 4 years ago
- Long read aligner for cyclic and acyclic pangenome graphs☆39Updated last year
- ☆16Updated 4 years ago
- A novel method for sequence similarity estimation☆28Updated last year
- Scaffolding with assembly likelihood optimization☆22Updated 4 years ago
- convert variation graph alignments to coverage maps over nodes☆24Updated 3 weeks ago
- Convert HAL to VG☆22Updated 11 months ago
- A k-mer search engine for all Sequence Read Archive public accessions☆29Updated 8 months ago
- ☆14Updated last year
- A lightweight library for working with PAF (Pairwise mApping Format) files☆31Updated 3 years ago
- Dividing heterogeneous long-read sequencing into groups with de Bruijn graphs☆25Updated 8 months ago
- Population-scale detection of non-reference sequence variants using colored de Bruijn Graphs☆24Updated last year
- Kmer Analysis of Pileups for Genotyping☆31Updated 3 weeks ago
- MEMO: MEM-based pangenome indexing for k-mer queries☆18Updated last year
- Haplotype-aware genome assembly toolkit☆29Updated 5 years ago
- Genome Assembly 102☆14Updated 2 months ago
- pangenome analyses for complete genomes of great apes (and gibbon)☆17Updated 9 months ago
- Fast long-read mapper and whole-genome aligner (accelerated version of minimap2)☆33Updated 3 weeks ago
- A framework for extracting telomeric reads from single-molecule sequencing experiments, describing their sequence variation and motifs, a…☆16Updated last year
- Software that separates very close sequences that have been collapsed during assembly. Uses only long reads.☆35Updated 2 months ago