caballero / RepeatLandscape
profile the repeat landscape in a genome
☆16Updated 10 years ago
Alternatives and similar repositories for RepeatLandscape
Users that are interested in RepeatLandscape are comparing it to the libraries listed below
Sorting:
- CAMSA: a tool for Comparative Analysis and Merging of Scaffold Assemblies☆24Updated 5 years ago
- Scaffolding with assembly likelihood optimization☆22Updated 4 years ago
- A comparative genome scaffolding tool☆17Updated 6 years ago
- Pipeline to detect PAVs (presence/absence variations) in genome comparison using whole genome alignment.☆29Updated 7 years ago
- Consensus genome annotation using OMA☆24Updated 2 weeks ago
- A nextflow pipeline for polishing CLR assemblies☆17Updated 2 years ago
- De-novo Assembly Structural Variant Caller☆13Updated 8 years ago
- Generating UTRs from SHort Reads☆12Updated 4 years ago
- Location of structural errors in a genome assembly and structural variations between a pair of genomes☆11Updated 5 years ago
- A loose collection of scripts and utilities for processing and analyzing the Goat reference genome assembly☆11Updated 8 years ago
- Tandem Repeats Finder: a program to analyze DNA sequences☆14Updated 2 years ago
- Add multiple thread function for genome comparison☆15Updated 3 years ago
- Haploidy and Size Completeness Estimation☆13Updated last year
- Scaffolding with Ultralong Reads☆15Updated 4 years ago
- ☆20Updated 3 years ago
- Segmental duplication detection tool☆15Updated 2 years ago
- Visualising discordant reads☆15Updated 9 years ago
- Convert HAL to VG☆22Updated 9 months ago
- Reduction of Althaps and Duplicate Contigs for Improved Hi-C Scaffolding☆20Updated 2 months ago
- Annotated Genome Optimization Using Transcriptome Information☆19Updated 4 years ago
- Genome assembly soft-masking using Red (REpeat Detector)☆17Updated 6 years ago
- Genome assembly scaffolding using information from paired-end/mate-pair libraries, long reads, and synteny to closely related species.☆24Updated 6 years ago
- A reliable gap filling pipeline for draft genomes☆11Updated 5 years ago
- ☆26Updated 4 years ago
- A program to generate a graph which presents a simplified representation of several full length genomes☆12Updated 6 years ago
- convert a blast output to a bed file☆12Updated 9 years ago
- The MafFilter genome alignment processor☆18Updated this week
- Phylogenetic Analysis of Long Terminal Repeat Retrotransposons☆17Updated 2 years ago
- Population-scale detection of non-reference sequence variants using colored de Bruijn Graphs☆24Updated last year
- A Hi-C scaffolding method☆23Updated 3 years ago