caballero / RepeatLandscapeLinks
profile the repeat landscape in a genome
☆16Updated 11 years ago
Alternatives and similar repositories for RepeatLandscape
Users that are interested in RepeatLandscape are comparing it to the libraries listed below
Sorting:
- Infering ancestral synteny with hierarchical orthologous groups☆36Updated 2 months ago
- Improved Phased Assembler☆28Updated 3 years ago
- Consensus genome annotation using OMA☆29Updated 5 months ago
- Reduction of Althaps and Duplicate Contigs for Improved Hi-C Scaffolding☆20Updated 9 months ago
- Better Alignments with Translated HMMER☆24Updated this week
- Location of structural errors in a genome assembly and structural variations between a pair of genomes☆11Updated 6 years ago
- Pipeline to detect PAVs (presence/absence variations) in genome comparison using whole genome alignment.☆29Updated 7 years ago
- Genome assembly soft-masking using Red (REpeat Detector)☆18Updated 7 years ago
- CAMSA: a tool for Comparative Analysis and Merging of Scaffold Assemblies☆24Updated 5 years ago
- Segmental duplication detection tool☆16Updated 2 years ago
- Generating UTRs from SHort Reads☆12Updated 5 years ago
- A nextflow pipeline for polishing CLR assemblies☆18Updated 2 years ago
- Scaffolding with assembly likelihood optimization☆21Updated 5 years ago
- A tool for recovering synteny blocks from multiple alignment☆32Updated 4 years ago
- ☆16Updated 7 years ago
- Workflows for correcting and scaffolding long-read (PacBio, nanopore) genome assemblies using optical mapping and/or Dovetail Hi-C data☆20Updated 5 years ago
- A tool to calculate ploidy levels from genotype likelihoods and coverage using Hidden Markov Models☆18Updated 3 years ago
- Convert HAL to VG☆23Updated last year
- Annotated Genome Optimization Using Transcriptome Information☆20Updated 5 years ago
- The MafFilter genome alignment processor☆19Updated this week
- A comparative genome scaffolding tool☆16Updated 7 years ago
- Robust Eukaryotic Annotation Toolkit☆18Updated 9 months ago
- Fast long-read mapper and whole-genome aligner (accelerated version of minimap2)☆36Updated 2 weeks ago
- The Vertebrate Genomes Project Mitogenome Assembly Pipeline☆19Updated 2 years ago
- a tree splitting and pruning algorithm for retrieving single-copy orthologs from gene family trees☆27Updated 3 months ago
- ☆26Updated 4 years ago
- Tools to process OrthoFinder output: Calculate the most common gene name of an orthogroup by majority vote and create plots analogous to …☆19Updated last year
- FastK based version of Merqury☆29Updated 2 months ago
- SINE annotation tool for plant genomes☆18Updated last year
- TD2☆27Updated 2 weeks ago