caballero / RepeatLandscapeLinks
profile the repeat landscape in a genome
☆16Updated 10 years ago
Alternatives and similar repositories for RepeatLandscape
Users that are interested in RepeatLandscape are comparing it to the libraries listed below
Sorting:
- CAMSA: a tool for Comparative Analysis and Merging of Scaffold Assemblies☆24Updated 5 years ago
- A comparative genome scaffolding tool☆17Updated 6 years ago
- Annotated Genome Optimization Using Transcriptome Information☆20Updated 5 years ago
- ☆15Updated 7 years ago
- De-novo Assembly Structural Variant Caller☆13Updated 8 years ago
- Scaffolding with Ultralong Reads☆15Updated 4 years ago
- WGS (Wheat) Robust Assembly Pipeline☆22Updated 3 years ago
- Location of structural errors in a genome assembly and structural variations between a pair of genomes☆11Updated 5 years ago
- A nextflow pipeline for polishing CLR assemblies☆17Updated 2 years ago
- Better Alignments with Translated HMMER☆21Updated last week
- Scaffolding with assembly likelihood optimization☆22Updated 4 years ago
- Consensus genome annotation using OMA☆24Updated this week
- Convert HAL to VG☆22Updated 10 months ago
- Genome assembly soft-masking using Red (REpeat Detector)☆17Updated 6 years ago
- Fast, Accurate, and Complete SSR Detection in Genomic Sequences☆11Updated 4 years ago
- Reduction of Althaps and Duplicate Contigs for Improved Hi-C Scaffolding☆20Updated 3 months ago
- The MafFilter genome alignment processor☆18Updated last month
- Improved Phased Assembler☆28Updated 3 years ago
- Workflows for correcting and scaffolding long-read (PacBio, nanopore) genome assemblies using optical mapping and/or Dovetail Hi-C data☆20Updated 4 years ago
- An algorithm for centromere assembly using long error-prone reads☆26Updated 4 years ago
- Identification of segmental duplications in the genome☆27Updated 3 years ago
- Population-scale detection of non-reference sequence variants using colored de Bruijn Graphs☆24Updated last year
- Pipeline to detect PAVs (presence/absence variations) in genome comparison using whole genome alignment.☆29Updated 7 years ago
- Scripts to split reference and run mummer in parallel on an SGE cluster☆11Updated 8 years ago
- A reliable gap filling pipeline for draft genomes☆11Updated 5 years ago
- A high performance tool to identify orthologs and paralogs across genomes.☆26Updated 2 years ago
- Add multiple thread function for genome comparison☆15Updated 3 years ago
- Segmental duplication detection tool☆15Updated 2 years ago
- A program to generate a graph which presents a simplified representation of several full length genomes☆13Updated 6 years ago
- Visualising discordant reads☆15Updated 9 years ago