caballero / RepeatLandscape
profile the repeat landscape in a genome
☆15Updated 10 years ago
Alternatives and similar repositories for RepeatLandscape:
Users that are interested in RepeatLandscape are comparing it to the libraries listed below
- A comparative genome scaffolding tool☆17Updated 6 years ago
- CAMSA: a tool for Comparative Analysis and Merging of Scaffold Assemblies☆24Updated 4 years ago
- Scaffolding with assembly likelihood optimization☆20Updated 4 years ago
- The MafFilter genome alignment processor☆17Updated 5 months ago
- Reduction of Althaps and Duplicate Contigs for Improved Hi-C Scaffolding☆19Updated 6 months ago
- Segmental duplication detection tool☆13Updated 2 years ago
- Annotated Genome Optimization Using Transcriptome Information☆19Updated 4 years ago
- De-novo Assembly Structural Variant Caller☆13Updated 8 years ago
- Location of structural errors in a genome assembly and structural variations between a pair of genomes☆11Updated 5 years ago
- Prefix-renaming FASTA records really fast.☆17Updated 7 months ago
- A nextflow pipeline for polishing CLR assemblies☆17Updated 2 years ago
- Generating UTRs from SHort Reads☆11Updated 4 years ago
- A program to generate a graph which presents a simplified representation of several full length genomes☆12Updated 6 years ago
- Scaffolding with Ultralong Reads☆15Updated 4 years ago
- transposable element typing pipeline☆17Updated 11 months ago
- Scripts to do haplotype analysis on pan genomes.☆21Updated 4 years ago
- Workflows for correcting and scaffolding long-read (PacBio, nanopore) genome assemblies using optical mapping and/or Dovetail Hi-C data☆20Updated 4 years ago
- Pipeline to detect PAVs (presence/absence variations) in genome comparison using whole genome alignment.☆29Updated 6 years ago
- Phylogenetic Analysis of Long Terminal Repeat Retrotransposons☆17Updated 2 years ago
- A reliable gap filling pipeline for draft genomes☆11Updated 5 years ago
- Better Alignments with Translated HMMER☆17Updated last week
- Scripts to split reference and run mummer in parallel on an SGE cluster☆11Updated 8 years ago
- A high performance tool to identify orthologs and paralogs across genomes.☆26Updated last year
- Genome assembly soft-masking using Red (REpeat Detector)☆16Updated 6 years ago
- ☆13Updated last year
- Haploidy and Size Completeness Estimation☆13Updated 10 months ago
- A Hi-C scaffolding method☆22Updated 3 years ago
- Convert HAL to VG☆21Updated 6 months ago
- An algorithm for centromere assembly using long error-prone reads☆26Updated 3 years ago