snu-cdrc / gencubeLinks
Efficient retrieval, download, and unification of genomic data from leading biodiversity databases
☆17Updated last week
Alternatives and similar repositories for gencube
Users that are interested in gencube are comparing it to the libraries listed below
Sorting:
- read, parse and operate different multiple input file formats with OpenVariant☆14Updated 2 months ago
- ☆38Updated last year
- ☆17Updated 6 months ago
- Allo: a multi-mapped read rescue strategy for gene regulatory analyses☆24Updated last year
- Rapid and accurate ancestry inference using SNVs.☆28Updated 5 months ago
- FunctionaL Omics Processing platform☆13Updated last year
- SAMStat displays various properties of next-generation sequencing reads stored in SAM/BAM format.☆24Updated 2 years ago
- cgat-apps repository☆34Updated 9 months ago
- Two pass alignment for long reads☆22Updated 4 years ago
- Analyse RNA feature distributions.☆18Updated last year
- Importing and manipulating Hi-C data in R☆11Updated 6 months ago
- Scoring GT/AG sites for improving spliced alignment☆49Updated 2 months ago
- Method for Identifying Novel Transcripts and Isoforms using Equivalence classes, in cancer and rare disease.☆37Updated last year
- End-guided RNA assembler☆15Updated last month
- ☆12Updated last year
- PhyloCSF++ computes PhyloCSF tracks for whole-genome multiple sequence alignments, scores single MSA, annotates CDS features in GFF/GTF f…☆31Updated 4 years ago
- A k-mer search engine for all Sequence Read Archive public accessions☆36Updated last year
- A Generative Pre-Trained Transformer Package for Pangenomes☆53Updated 8 months ago
- A software suite for accurate identification, annotation, translation, and feature characterization of annotate transcripts.☆22Updated 4 years ago
- ☆31Updated 7 months ago
- DNA multiple sequence aligner, official version from Penn State's Miller Lab☆36Updated 6 years ago
- ☆20Updated 3 years ago
- Ultra-fast, high-performing structural variation (SV) detector☆23Updated 2 years ago
- Snakemake workflow for Illumina RNA-sequencing experiments - extract population genomic signals from RNA-Seq data☆18Updated 9 months ago
- A barcode demultiplexer for Oxford Nanopore long-read amplicon sequencing data☆10Updated last year
- Simultaneous multi-sample transcript assembler for RNA-seq data☆18Updated last year
- Teaching modules for Human Genome Variation Lab.☆20Updated 7 months ago
- Toy files and training material to introduce Linux to molecular biologists☆22Updated 2 years ago
- A script to make downloading of SRA/GEO data easier☆33Updated 2 years ago
- Long read to rMATS☆32Updated 2 years ago