Alternatives and similar repositories for gencube

Users that are interested in gencube are comparing it to the libraries listed below

• bbglab / openvariant
  Read, parse and operate different multiple input file formats with OpenVariant
  ☆14Updated last week
• xia-lab / Seq2Fun
  ☆17Updated 5 months ago
• TimoLassmann / samstat
  SAMStat displays various properties of next-generation sequencing reads stored in SAM/BAM format.
  ☆24Updated 2 years ago
• comprna / R2Dtool
  Analyse RNA feature distributions.
  ☆17Updated 11 months ago
• CAST-genomics / haptools
  Ancestry and haplotype aware simulation of genotypes and phenotypes for complex trait analysis
  ☆24Updated last month
• cpockrandt / PhyloCSFpp
  PhyloCSF++ computes PhyloCSF tracks for whole-genome multiple sequence alignments, scores single MSA, annotates CDS features in GFF/GTF f…
  ☆30Updated 3 years ago
• srbehera / DRAGEN_Analysis
  ☆37Updated last year
• anonconda / TranSuite
  A software suite for accurate identification, annotation, translation, and feature characterization of annotate transcripts.
  ☆20Updated 4 years ago
• nch-cloud / snvstory
  Rapid and accurate ancestry inference using SNVs.
  ☆28Updated 3 months ago
• tkzeng / GeneBayes
  ☆29Updated 5 months ago
• TNTurnerLab / HAT
  HAT is a set of tools for calling de novo variants from whole-genome sequencing data.
  ☆24Updated 3 weeks ago
• makovalab-psu / T2T_primate_XY
  ☆12Updated last year
• Gregor-Mendel-Institute / bookend
  End-guided RNA assembler
  ☆15Updated last week
• BorgwardtLab / networkGWAS
  Method for performing genome-wide association like studies on neighborhoods identified on biological networks relevant for the phenotype …
  ☆16Updated 2 years ago
• lh3 / minisplice
  Scoring GT/AG sites for improving spliced alignment
  ☆46Updated last month
• sanjaynagi / rna-seq-pop
  Snakemake workflow for Illumina RNA-sequencing experiments - extract population genomic signals from RNA-Seq data
  ☆18Updated 8 months ago
• saezlab / flop
  FunctionaL Omics Processing platform
  ☆13Updated last year
• montilab / nf-gwas-pipeline
  A Nextflow Genome-Wide Association Study (GWAS) Pipeline
  ☆35Updated 5 months ago
• splicebox / PsiCLASS
  Simultaneous multi-sample transcript assembler for RNA-seq data
  ☆17Updated 11 months ago
• aakechin / cutPrimers
  curPrimers is a tool for trimming primer sequences from amplicon based NGS reads
  ☆17Updated 6 months ago
• torkian / blast-QC
  A Quality Control filter and parser for NCBI BLAST XML results.
  ☆17Updated 5 years ago
• jonassibbesen / vgrna-project-paper
  Bash scripts and data used in pantranscriptomic paper
  ☆24Updated 3 years ago
• mol-evol / panGPT
  A Generative Pre-Trained Transformer Package for Pangenomes
  ☆53Updated 6 months ago
• zstephens / telogator
  A method for measuring chromosome-specific telomere length from long reads
  ☆22Updated last year
• gymrek-lab / EnsembleTR
  Tools for merging Tandem Repeat VCF files
  ☆37Updated 7 months ago
• XiDsLab / TAGET
  ☆20Updated 3 years ago
• guigolab / LyRic
  Long RNA-seq analysis workflow
  ☆21Updated last month
• JSB-UCLA / Clipper
  A p-value-free method for controlling false discovery rates in high-throughput biological data with two conditions
  ☆40Updated 3 years ago
• SFGLab / ConsensuSV-pipeline
  Automatised pipeline of ConsensuSV workflow.
  ☆24Updated 2 years ago
• SJTU-CGM / HUPAN
  Human pan-genome analysis pipeline
  ☆31Updated 5 years ago