bergmanlab / drosophila-transposons
Drosophila transposable element canonical sequences
☆28Updated 2 years ago
Alternatives and similar repositories for drosophila-transposons:
Users that are interested in drosophila-transposons are comparing it to the libraries listed below
- Error correction of ONT transcript reads☆58Updated last year
- dnaPipeTE (for de-novo assembly & annotation Pipeline for Transposable Elements), is a pipeline designed to find, annotate and quantify T…☆54Updated 2 years ago
- ENCODE long read RNA-seq pipeline☆45Updated 2 years ago
- A (very) simple script to QC Hi-C data.☆25Updated 3 months ago
- ☆47Updated 7 months ago
- Set of tools to manipulate and visualize modified base bam files☆52Updated 2 years ago
- Algorithm to detect germline and de novo transposon insertions☆27Updated 11 months ago
- An R package for estimating poly(A)-tail lengths in Oxford Nanopore RNA and DNA reads.☆53Updated 5 months ago
- LRSDAY: Long-read Sequencing Data Analysis for Yeasts☆31Updated last year
- Methylation Phasing for Nanopore Sequencing☆47Updated 2 years ago
- web documentation for Trinotate☆48Updated 2 years ago
- Analysis of TE contribution to features (transcripts or simple features). Includes utils to test enrichment.☆26Updated 5 years ago
- PhyloAcc a software to detect the changes of conservation of a genomic region☆30Updated last week
- Pipeline for annotating genomes using long read transcriptomics data with pinfish☆27Updated 4 years ago
- A Nextflow workflow to generate lift over files for any pair of genomes☆64Updated last month
- Simple pileup-based variant caller☆87Updated last month
- Code for phasing SVs with SNPs☆52Updated 5 years ago
- ☆43Updated 8 years ago
- Same species annotation lift over pipeline.☆97Updated last year
- Genome scaffolding based on HiC data in heterozygous and high ploidy genomes☆60Updated 3 months ago
- Identify and annotate TE-mediated insertions in long-read sequence data☆41Updated last year
- De novo annotation of young retrotransposons☆48Updated 2 years ago
- Somatic structural variant caller for long-read data☆62Updated this week
- ☆29Updated 4 years ago
- EM based transcript abundance from nanopore reads mapped to a transcriptome with minimap2☆59Updated 5 months ago
- ☆79Updated 3 weeks ago
- ☆24Updated last month
- Simple code snippets and data for the One Flowcell - One Assembly study☆36Updated 7 years ago
- ☆26Updated 3 weeks ago
- Calculate GC% and GC deviation for circular genomes☆17Updated 4 years ago