bergmanlab / drosophila-transposonsLinks
Drosophila transposable element canonical sequences
☆28Updated 2 years ago
Alternatives and similar repositories for drosophila-transposons
Users that are interested in drosophila-transposons are comparing it to the libraries listed below
Sorting:
- Error correction of ONT transcript reads☆58Updated last year
- ☆28Updated last month
- ☆80Updated 3 months ago
- Pipeline for annotating genomes using long read transcriptomics data with pinfish☆28Updated 4 years ago
- A (very) simple script to QC Hi-C data.☆25Updated 5 months ago
- dnaPipeTE (for de-novo assembly & annotation Pipeline for Transposable Elements), is a pipeline designed to find, annotate and quantify T…☆56Updated 2 years ago
- Simple pileup-based variant caller☆90Updated last month
- ENCODE long read RNA-seq pipeline☆48Updated 2 years ago
- ☆25Updated 3 months ago
- Same species annotation lift over pipeline.☆97Updated last year
- EM based transcript abundance from nanopore reads mapped to a transcriptome with minimap2☆60Updated 7 months ago
- Set of tools to manipulate and visualize modified base bam files☆56Updated 2 years ago
- Genome annotation with PacBio Iso-Seq. Takes raw subreads as input, generate Full Length Non Chemiric (FLNC) sequences and produce a bed …☆43Updated this week
- An R package for estimating poly(A)-tail lengths in Oxford Nanopore RNA and DNA reads.☆53Updated 7 months ago
- Analysis of TE contribution to features (transcripts or simple features). Includes utils to test enrichment.☆27Updated 5 years ago
- Methylation Phasing for Nanopore Sequencing☆48Updated 2 years ago
- De novo annotation of young retrotransposons☆48Updated 3 years ago
- ☆44Updated 8 years ago
- ☆48Updated 9 months ago
- Genome Annotation Without Nightmares☆45Updated 4 months ago
- PhyloAcc a software to detect the changes of conservation of a genomic region☆32Updated last month
- Lima - Demultiplex Barcoded PacBio Samples☆67Updated 3 weeks ago
- Genome scaffolding based on HiC data in heterozygous and high ploidy genomes☆60Updated 5 months ago
- Tools for working with second gen assemblies, fasta sequences, etc☆93Updated 8 years ago
- SQANTI2 is now replaced by SQANTI3. Please go to: https://github.com/ConesaLab/SQANTI3☆38Updated 4 years ago
- python plotly Circos from VCF☆36Updated 11 months ago
- Copy number variant caller and depth visualization utility for PacBio HiFi reads☆43Updated 7 months ago
- Simple code snippets and data for the One Flowcell - One Assembly study☆36Updated 7 years ago
- Scripts and procedures for detecting positively selected genes and codons in primates☆21Updated 4 years ago
- Code for phasing SVs with SNPs☆52Updated 5 years ago