bergmanlab / drosophila-transposonsLinks
Drosophila transposable element canonical sequences
☆28Updated 2 years ago
Alternatives and similar repositories for drosophila-transposons
Users that are interested in drosophila-transposons are comparing it to the libraries listed below
Sorting:
- Error correction of ONT transcript reads☆58Updated last year
- Analysis of TE contribution to features (transcripts or simple features). Includes utils to test enrichment.☆27Updated 5 years ago
- dnaPipeTE (for de-novo assembly & annotation Pipeline for Transposable Elements), is a pipeline designed to find, annotate and quantify T…☆57Updated 2 years ago
- Methylation Phasing for Nanopore Sequencing☆48Updated 2 years ago
- Pipeline for annotating genomes using long read transcriptomics data with pinfish☆28Updated 4 years ago
- A (very) simple script to QC Hi-C data.☆25Updated 6 months ago
- EM based transcript abundance from nanopore reads mapped to a transcriptome with minimap2☆61Updated 8 months ago
- ☆48Updated 10 months ago
- Same species annotation lift over pipeline.☆97Updated last year
- Genome scaffolding based on HiC data in heterozygous and high ploidy genomes☆60Updated 5 months ago
- Set of tools to manipulate and visualize modified base bam files☆56Updated 2 years ago
- Simple pileup-based variant caller☆90Updated 2 months ago
- GENE-SWitCH project RNA-Seq analysis pipeline☆26Updated 4 months ago
- De novo annotation of young retrotransposons☆48Updated 3 years ago
- ☆28Updated last month
- A Nextflow workflow to generate lift over files for any pair of genomes☆68Updated last week
- Tools for working with second gen assemblies, fasta sequences, etc☆93Updated 8 years ago
- Genome Annotation Without Nightmares☆45Updated 5 months ago
- Transposable Elements MOvement detection using LOng reads☆22Updated last week
- PhyloAcc a software to detect the changes of conservation of a genomic region☆32Updated 2 months ago
- BamDeal: a comprehensive toolkit for bam manipulation☆54Updated 2 years ago
- ☆26Updated 4 months ago
- ☆44Updated 8 years ago
- Simple code snippets and data for the One Flowcell - One Assembly study☆35Updated 7 years ago
- Lima - Demultiplex Barcoded PacBio Samples☆67Updated last month
- ENCODE long read RNA-seq pipeline☆48Updated 2 years ago
- DEPRECATED - Workflow for the comprehensive detection and prioritization of variants in human genomes with PacBio HiFi reads☆38Updated last year
- Code for phasing SVs with SNPs☆52Updated 5 years ago
- python plotly Circos from VCF☆38Updated last year
- LRSDAY: Long-read Sequencing Data Analysis for Yeasts☆31Updated last year