bergmanlab / drosophila-transposons
Drosophila transposable element canonical sequences
☆26Updated 2 years ago
Related projects ⓘ
Alternatives and complementary repositories for drosophila-transposons
- Error correction of ONT transcript reads☆58Updated last year
- ☆24Updated 2 years ago
- A (very) simple script to QC Hi-C data.☆25Updated last year
- PhyloAcc a software to detect the changes of conservation of a genomic region☆29Updated last month
- De novo annotation of young retrotransposons☆46Updated 2 years ago
- dnaPipeTE (for de-novo assembly & annotation Pipeline for Transposable Elements), is a pipeline designed to find, annotate and quantify T…☆51Updated last year
- Simple code snippets and data for the One Flowcell - One Assembly study☆36Updated 6 years ago
- Genome scaffolding based on HiC data in heterozygous and high ploidy genomes☆59Updated 3 years ago
- Code for phasing SVs with SNPs☆52Updated 4 years ago
- TELR is a fast non-reference transposable element detector from long read sequencing data.☆32Updated last year
- EM based transcript abundance from nanopore reads mapped to a transcriptome with minimap2☆56Updated last month
- Materials for Spring 2021 Applied Genomics Course☆52Updated 3 years ago
- ☆43Updated 7 years ago
- Simple pileup-based variant caller☆83Updated 7 months ago
- ☆48Updated 2 months ago
- Identify and annotate TE-mediated insertions in long-read sequence data☆40Updated last year
- ☆24Updated last month
- Analysis of TE contribution to features (transcripts or simple features). Includes utils to test enrichment.☆24Updated 5 years ago
- perSVade: personalized Structural Variation detection☆37Updated 5 months ago
- SQANTI2 is now replaced by SQANTI3. Please go to: https://github.com/ConesaLab/SQANTI3☆38Updated 4 years ago
- Set of tools to manipulate and visualize modified base bam files☆49Updated 2 years ago
- TSEBRA: Transcript Selector for BRAKER☆47Updated last week
- Transposable Elements MOvement detection using LOng reads☆19Updated this week
- Long-read Isoform Quantification and Analysis☆39Updated 3 months ago
- Generates an NCBI .tbl file of annotations on a genome.☆65Updated 6 years ago
- Pipeline for annotating genomes using long read transcriptomics data with pinfish☆27Updated 3 years ago
- web documentation for Trinotate☆48Updated last year