bergmanlab / drosophila-transposonsLinks
Drosophila transposable element canonical sequences
☆29Updated 3 years ago
Alternatives and similar repositories for drosophila-transposons
Users that are interested in drosophila-transposons are comparing it to the libraries listed below
Sorting:
- Comprehensive TE insertion identification with WGS/WES data from multiple sequencing technics☆117Updated 4 months ago
- ☆31Updated last month
- Same species annotation lift over pipeline.☆98Updated 2 years ago
- Methylation Phasing for Nanopore Sequencing☆48Updated 2 years ago
- Error correction of ONT transcript reads☆58Updated 2 years ago
- MEGAnE☆33Updated 2 years ago
- Correct mismatches, microindels, and noncanonical splice junctions in long reads that have been mapped to the genome☆70Updated last year
- Set of tools to manipulate and visualize modified base bam files☆57Updated 3 years ago
- EM based transcript abundance from nanopore reads mapped to a transcriptome with minimap2☆64Updated last year
- Runs a combination of tools to generate structural variant calls on whole-genome sequencing data☆48Updated 5 years ago
- ENCODE long read RNA-seq pipeline☆51Updated 2 years ago
- Lima - Demultiplex Barcoded PacBio Samples☆67Updated 6 months ago
- Long Reads Annotation pipeline☆72Updated 3 years ago
- Meta-pipeline to identify transposable element insertions using next generation sequencing data☆105Updated 5 months ago
- Wally: Visualization of aligned sequencing reads and contigs☆120Updated last month
- Genome annotation with PacBio Iso-Seq. Takes raw subreads as input, generate Full Length Non Chemiric (FLNC) sequences and produce a bed …☆49Updated last week
- Pore-C support☆53Updated 2 years ago
- Toolkit for calling structural variants using short or long reads☆111Updated last month
- ☆83Updated 8 months ago
- BAM Statistics, Feature Counting and Annotation☆151Updated this week
- Identify and annotate TE-mediated insertions in long-read sequence data☆46Updated 4 months ago
- Somatic structural variant caller for long-read data☆83Updated last week
- Genome scaffolding based on HiC data in heterozygous and high ploidy genomes☆60Updated 10 months ago
- Pipeline for annotating genomes using long read transcriptomics data with pinfish☆28Updated 4 years ago
- Analysis of TE contribution to features (transcripts or simple features). Includes utils to test enrichment.☆29Updated 6 years ago
- Tools for working with second gen assemblies, fasta sequences, etc☆93Updated 9 years ago
- ☆51Updated last month
- Structural variant caller for real-time long-read sequencing data☆58Updated 2 years ago
- Robust detection of clinically relevant structural and copy number variation from whole genome sequencing data☆75Updated last year
- BS-Seeker3: An Ultra-fast, Versatile Pipeline for Mapping Bisulfite-treated Reads.☆28Updated 6 years ago