A fully automated gene annotator from RNA-Seq expression data
☆62Jul 1, 2023Updated 2 years ago
Alternatives and similar repositories for Finder
Users that are interested in Finder are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Simultaneous multi-sample transcript assembler for RNA-seq data☆17Dec 13, 2024Updated last year
- Gapless provides combined scaffolding, gap-closing and assembly correction with long reads☆38Mar 5, 2023Updated 3 years ago
- SINE annotation tool for plant genomes☆19Jan 21, 2024Updated 2 years ago
- ☆32Mar 3, 2026Updated 2 months ago
- Annotation of cryptic transposon variants using Hidden Markov Models to detect conserved terminal features.☆10May 2, 2026Updated 3 weeks ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- Tiberius is a deep learning gene finder.☆115May 6, 2026Updated 3 weeks ago
- Genome assembly soft-masking using Red (REpeat Detector)☆18Dec 7, 2018Updated 7 years ago
- GALBA is a pipeline for fully automated prediction of protein coding gene structures with AUGUSTUS in novel eukaryotic genomes for the sc…☆149Apr 13, 2026Updated last month
- a tool to evaluate long-read error correction mainly with PacBio High-Fidelity Reads (HiFi reads).☆20Dec 5, 2023Updated 2 years ago
- De novo annotation of young retrotransposons☆47Apr 24, 2026Updated last month
- Using Deep Learning to predict gene annotations☆289May 21, 2026Updated last week
- TSEBRA: Transcript Selector for BRAKER☆49Apr 7, 2026Updated last month
- Yet another Hi-C scaffolding tool☆181Nov 4, 2024Updated last year
- A tool for discovering transposable elements and describing patterns of genome evolution☆31Apr 23, 2023Updated 3 years ago
- GPUs on demand by Runpod - Special Offer Available • AdRun AI, ML, and HPC workloads on powerful cloud GPUs—without limits or wasted spend. Deploy GPUs in under a minute and pay by the second.
- Tools for fast and flexible genome assembly scaffolding and improvement☆564Feb 14, 2024Updated 2 years ago
- Whole organelle genome-wide alignment construction method, which ultilizes BLAST tool, to facilitate phylogeny analysis☆15Aug 27, 2023Updated 2 years ago
- Domain based annotation of transposable elements☆23Oct 8, 2025Updated 7 months ago
- OMAmer - tree-driven and alignment-free protein assignment to sub-families☆22Apr 29, 2026Updated last month
- Functional annotation pipeline for proteins from non-model organisms implemented in Nextflow☆19Feb 28, 2022Updated 4 years ago
- Workflow for identifying and classifying homologous gene/protein sequences☆21Oct 6, 2025Updated 7 months ago
- A program for assessing the T2T genome continuity and completeness☆95Feb 28, 2026Updated 3 months ago
- TransposonUltimate - a holistic set of tools for transposon identification☆86Mar 4, 2022Updated 4 years ago
- ☆120Oct 10, 2025Updated 7 months ago
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- ☆15Aug 6, 2025Updated 9 months ago
- Genome mapping and spliced alignment of cDNA or amino acid sequences☆113Feb 28, 2026Updated 3 months ago
- Eukaryotic Genome Annotation Pipeline☆385Updated this week
- ☆12Jun 12, 2023Updated 2 years ago
- Mabs, a genome assembly tool that optimizes parameters of Hifiasm and Flye☆36Apr 20, 2026Updated last month
- HiC-Hiker: A probabilistic model to determine contig orientation in chromosome-length scaffolds with Hi-C☆26Jan 14, 2021Updated 5 years ago
- A genome completeness evaluation tool based on miniprot☆242Sep 18, 2025Updated 8 months ago
- An accurate GFF3/GTF lift over pipeline☆539Aug 1, 2023Updated 2 years ago
- A single fast and exhaustive tool for summary statistics and simultaneous *fa* (fasta, fastq, gfa [.gz]) genome assembly file manipulatio…☆122Apr 28, 2026Updated last month
- Bare Metal GPUs on DigitalOcean Gradient AI • AdPurpose-built for serious AI teams training foundational models, running large-scale inference, and pushing the boundaries of what's possible.
- Inference of ploidy and heterozygosity structure using whole genome sequencing data☆294Feb 25, 2026Updated 3 months ago
- A scaffold assembling pipeline for stLFR reads.☆14Mar 15, 2021Updated 5 years ago
- Synteny and Rearrangement Identifier☆468May 20, 2026Updated last week
- 🚀 LiftOn: Accurate annotation mapping for GFF/GTF across assemblies☆124May 4, 2026Updated 3 weeks ago
- Synteny Mapping and Analysis Program☆30May 8, 2026Updated 3 weeks ago
- Code to perform homolog detectability analyses as described in Weisman et al. 2020 (https://www.biorxiv.org/content/10.1101/2020.02.27.96…☆18Nov 18, 2024Updated last year
- I often use some of the self-written programs.☆16May 13, 2026Updated 2 weeks ago