sagnikbanerjee15 / FinderLinks
A fully automated gene annotator from RNA-Seq expression data
☆61Updated 2 years ago
Alternatives and similar repositories for Finder
Users that are interested in Finder are comparing it to the libraries listed below
Sorting:
- Workflow for Building Microsynteny Networks☆58Updated 3 years ago
- TransposonUltimate - a holistic set of tools for transposon identification☆85Updated 3 years ago
- A Circos-based tool to visualize genome assembly consistency or synteny between assemblies.☆88Updated last year
- FastOMA is a scalable software package to infer orthology relationship.☆86Updated last week
- A program for detection of tRNA genes☆80Updated 3 years ago
- 🚀 LiftOn: Accurate annotation mapping for GFF/GTF across assemblies☆118Updated last month
- Tiberius is a deep learning gene finder.☆87Updated this week
- Prediction of apoplastic and cytoplasmic effectors in fungi and oomycetes☆25Updated 3 years ago
- Best practices and workflow for genome annotation☆79Updated 8 months ago
- List of genome assembly tools☆89Updated last week
- Scripting analyses of genomes in Ensembl Plants☆41Updated last week
- Protein hint generation pipeline for gene finding in eukaryotic genomes☆60Updated 2 years ago
- Neural network classification of TE☆97Updated 3 months ago
- NLR annotation tool☆35Updated last year
- k-mer learning materials☆82Updated 10 months ago
- This is the standalone version of the EviAnn pipeline☆133Updated 3 weeks ago
- Analysis of convergence between organismal traits and DNA/protein sequences☆60Updated this week
- Genome mapping and spliced alignment of cDNA or amino acid sequences☆109Updated 7 months ago
- BUSCO Phylogenomics | Utility script to construct species phylogenies using BUSCO proteins☆90Updated last year
- dnaPipeTE (for de-novo assembly & annotation Pipeline for Transposable Elements), is a pipeline designed to find, annotate and quantify T…☆59Updated 2 years ago
- A list of software for pangenomics☆165Updated this week
- Python programs for processing GFF3 files☆102Updated 3 weeks ago
- SynVisio is an interactive multiscale visualization tool that lets you explore the results of McScanX a popular synteny and collinearity …☆93Updated last month
- genEra is a fast and easy-to-use command-line tool that estimates the age of the last common ancestor of protein-coding gene families.☆54Updated last year
- The SYNY pipeline investigates synteny between species by reconstructing protein clusters from gene pairs.☆49Updated 2 weeks ago
- LTR_Finder is an efficient program for finding full-length LTR retrotranspsons in genome sequences.☆51Updated last year
- ☆88Updated last month
- High throughput protein function annotation with Human Readable Description (HRDs) and Gene Ontology (GO) Terms.☆67Updated 2 years ago
- Phylogenetic orthology inference for comparative genomics☆80Updated 3 weeks ago
- a tool for inferring species tree from sequencing reads☆156Updated last month