Python wrappers for programs that search for transposable elements
☆19Jul 12, 2016Updated 9 years ago
Alternatives and similar repositories for TE-search-tools
Users that are interested in TE-search-tools are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- dnaPipeTE (for de-novo assembly & annotation Pipeline for Transposable Elements), is a pipeline designed to find, annotate and quantify T…☆60Mar 29, 2023Updated 3 years ago
- Few scripts facilitating the extraction of info from Repeat Masker .out files☆85May 25, 2021Updated 4 years ago
- A tool to construct repeats directly from raw reads☆17May 29, 2021Updated 4 years ago
- A box of genomics tools☆22Aug 26, 2020Updated 5 years ago
- TransposonUltimate - a holistic set of tools for transposon identification☆86Mar 4, 2022Updated 4 years ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- TEFLoN uses paired-end illumina sequence data to discover and genotype transposable elements present in your samples.☆13Mar 5, 2021Updated 5 years ago
- source code of the paper "RepLong - de novo repeat discovery from long reads"☆18Jan 4, 2025Updated last year
- TEtrimmer: a novel tool to automate manual curation of transposable elements☆114Updated this week
- ☆17Jun 28, 2025Updated 9 months ago
- Utilities written for bioinformatics☆17Sep 27, 2022Updated 3 years ago
- GAPPadder is tool for closing gaps on draft genomes with short sequencing data☆28Jun 1, 2017Updated 8 years ago
- Programs implementing the trio-binning genome assembly method☆21Nov 22, 2023Updated 2 years ago
- scripts used to analyse horizontal transfer and evolution of transposable elements in 307 vertebrate species☆11May 16, 2021Updated 4 years ago
- SINE annotation tool for plant genomes☆19Jan 21, 2024Updated 2 years ago
- Bare Metal GPUs on DigitalOcean Gradient AI • AdPurpose-built for serious AI teams training foundational models, running large-scale inference, and pushing the boundaries of what's possible.
- SynVisio is an interactive multiscale visualization tool that lets you explore the results of McScanX a popular synteny and collinearity …☆93Nov 24, 2025Updated 4 months ago
- Transposable Elements Representation Learner (TERL)☆20Jun 2, 2025Updated 10 months ago
- Pipelines for the production of Treeval data☆30Updated this week
- Workflow for Building Microsynteny Networks☆61Jul 30, 2022Updated 3 years ago
- Small utility to quickly find size and GC content of a fasta file. Can also extract sequence. Who doesn't like QUICK and DIRTY!☆13Aug 27, 2018Updated 7 years ago
- Domain based annotation of transposable elements☆23Oct 8, 2025Updated 6 months ago
- BUSCO_Phylogenomics | Pipeline to construct species phylogenies using BUSCO proteins☆98Apr 9, 2026Updated last week
- De novo annotation of young retrotransposons☆47Apr 12, 2022Updated 4 years ago
- ExOrthist: a pipeline to extract exon orthologies at any evolutionary distance.☆25Dec 5, 2024Updated last year
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- Distribution of TEs and their relationship to genes in host genome☆24Jun 20, 2023Updated 2 years ago
- An algorithm for centromere assembly using long error-prone reads☆25May 25, 2021Updated 4 years ago
- A software to assemble chloroplast and mitochodrial genomes using PacBio data☆40May 21, 2020Updated 5 years ago
- Scaffolding of genomic assemblies with RNA seq data☆15Oct 8, 2015Updated 10 years ago
- A fully automated gene annotator from RNA-Seq expression data☆62Jul 1, 2023Updated 2 years ago
- FamDB file format library and utilities☆38Aug 27, 2025Updated 7 months ago
- Reference-free profiling of polyploid genomes☆144Oct 2, 2025Updated 6 months ago
- CAMSA: a tool for Comparative Analysis and Merging of Scaffold Assemblies☆25Apr 13, 2020Updated 6 years ago
- Genome alignment and synteny plots☆34Mar 24, 2026Updated 3 weeks ago
- Wordpress hosting with auto-scaling - Free Trial • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Utilities to detect and profile `het-kmers`☆12Aug 5, 2024Updated last year
- Exploring the Phylogenetic Signal in Continuous Traits☆19Jun 10, 2025Updated 10 months ago
- Calculate circos format data of GC content and GC skew from genome data.☆12Sep 20, 2025Updated 6 months ago
- Reproducible Phylogenomics☆22Jun 28, 2016Updated 9 years ago
- A new algorithm for scaffolding☆10Sep 18, 2018Updated 7 years ago
- Fast download BLAST databases from NCBI.☆35Feb 7, 2024Updated 2 years ago
- Genome assembly scaffolding using information from paired-end/mate-pair libraries, long reads, and synteny to closely related species.☆24Dec 6, 2018Updated 7 years ago