HullUni-bioinformatics / TE-search-toolsLinks
Python wrappers for programs that search for transposable elements
☆19Updated 9 years ago
Alternatives and similar repositories for TE-search-tools
Users that are interested in TE-search-tools are comparing it to the libraries listed below
Sorting:
- ☆45Updated 8 years ago
- Call select base modifications in PacBio HiFi reads☆15Updated 3 weeks ago
- A python script for finding telomeric repeats (TTAGGG/CCCTAA) in FASTA files☆35Updated 3 years ago
- Scripts to estimate genome size and coverage from kmer distribution generated by jellyfish☆57Updated 2 years ago
- A program to call variants from genome alignment☆81Updated 7 months ago
- TSEBRA: Transcript Selector for BRAKER☆49Updated 3 weeks ago
- A collection of scripts for working with Hi-C data, Juicebox, and other genomic file formats☆69Updated 4 years ago
- dnaPipeTE (for de-novo assembly & annotation Pipeline for Transposable Elements), is a pipeline designed to find, annotate and quantify T…☆59Updated 2 years ago
- A software to assemble chloroplast and mitochodrial genomes using PacBio data☆40Updated 5 years ago
- calling SVs from Blasr contig level alignments☆54Updated 7 years ago
- A tool for evaluate long-read de novo assembly results☆48Updated last year
- ☆33Updated 4 years ago
- use long sequenced reads to close gaps in assemblies☆39Updated 7 years ago
- A shiny application to visualize MCscan result☆37Updated 3 years ago
- TGS scaffolding☆47Updated 4 years ago
- A fast tool for detecting and decomposing segmental duplications in genome assemblies☆54Updated 4 months ago
- finshingTool☆54Updated 9 years ago
- Identification of transposable element families from pangenome polymorphisms☆53Updated 6 months ago
- RAiSD: software to detect positive selection based on multiple signatures of a selective sweep and SNP vectors☆36Updated 2 years ago
- Accompanying repository for our publications on manual curation methods for Transposable Elements.☆21Updated last year
- Draw a dot plot from a paf alignment☆35Updated 2 months ago
- An easy way to run BioNano genomic analysis☆28Updated 4 years ago
- Python script calculating transposable element density for all genes in a genome. Publication: https://mobilednajournal.biomedcentral.com…☆35Updated last year
- ☆68Updated last month
- Compute N50/NG50 and auN/auNG☆33Updated 2 years ago
- MUM&Co is a simple bash script that uses Whole Genome Alignment information provided by MUMmer (only v4) to detect Structural Variation☆75Updated 3 months ago
- Gene model transfer from closely related reference genomes using cDNA alignments☆10Updated 5 years ago
- Show pangenome graphs in an easy way☆56Updated 4 months ago
- Identification of errors in draft genome assemblies with single-base pair resolution for quality assessment and improvement☆74Updated last week
- Read, manipulate and visualize 'Pairwise mApping Format' data in R☆76Updated 4 years ago