Transposable Elements MOvement detection using LOng reads
☆25Jul 24, 2025Updated 7 months ago
Alternatives and similar repositories for TrEMOLO
Users that are interested in TrEMOLO are comparing it to the libraries listed below
Sorting:
- Software for detecting transposable element insertions from next-generation sequencing data☆10Feb 24, 2023Updated 3 years ago
- ☆10Jul 1, 2020Updated 5 years ago
- ☆10Jan 29, 2020Updated 6 years ago
- Drosophila transposable element canonical sequences☆29Jul 11, 2022Updated 3 years ago
- Identify and annotate TE-mediated insertions in long-read sequence data☆46Jul 7, 2025Updated 7 months ago
- Meta-pipeline to identify transposable element insertions using next generation sequencing data☆104May 31, 2025Updated 9 months ago
- TELR is a fast non-reference transposable element detector from long read sequencing data.☆35Jul 27, 2023Updated 2 years ago
- PiRATE (Pipeline to Retrieve and Annotate Transposable Elements)☆19Nov 10, 2024Updated last year
- RepEnrich2 is an updated method to estimate repetitive element enrichment using high-throughput sequencing data.☆41Feb 14, 2022Updated 4 years ago
- TEspeX - pipeline for Transposable Elements expression quantification☆22Aug 24, 2023Updated 2 years ago
- TEMP is a software package for detecting transposable elements (TEs) insertions and excisions from pooled high-throughput sequencing dat…☆22Jul 31, 2017Updated 8 years ago
- Annotation helper tool for the manual curation of transposable element consensus sequences☆53Mar 5, 2025Updated 11 months ago
- ☆23Jun 5, 2021Updated 4 years ago
- A pipeline for Smooth-seq data analysis.☆10Sep 23, 2021Updated 4 years ago
- R package to easily generate "V-plots" of paired-end sequencing data over regions of interest☆11Dec 1, 2023Updated 2 years ago
- read and analyse RepeatMasker output☆27May 22, 2023Updated 2 years ago
- Estimating repeat spectra and genome length from low-coverage genome skims☆12Aug 6, 2023Updated 2 years ago
- TransposonUltimate - a holistic set of tools for transposon identification☆86Mar 4, 2022Updated 3 years ago
- GraffiTE is a pipeline that finds polymorphic transposable elements in genome assemblies and/or long reads, and genotypes the discovered …☆237Updated this week
- ☆27Feb 19, 2025Updated last year
- ASCETIC (Agony-baSed Cancer EvoluTion InferenCe) is a novel framework for the inference of a set of statistically significant temporal pa…☆12Apr 18, 2025Updated 10 months ago
- Analysis of transposable elements☆13Dec 4, 2025Updated 2 months ago
- A collection of perl scripts for NGS analysis☆17Oct 2, 2024Updated last year
- meta-pipeline for repetitive element de-fragmentation and annotation☆28Oct 1, 2020Updated 5 years ago
- single-cell analysis workflows for double phosphoramidite barcode and UMI Correction (scCOLOR-seq)☆13Jul 13, 2023Updated 2 years ago
- Mobile Genetic Elements Retrieving Tool☆16Feb 11, 2026Updated 2 weeks ago
- TE tools for TE RNASeq and smallRNASeq analysis with galaxy☆12Apr 2, 2021Updated 4 years ago
- Invertory of TE-gene isoforms☆14Sep 18, 2023Updated 2 years ago
- ☆35Nov 1, 2021Updated 4 years ago
- MitoFinder: efficient automated large-scale extraction of mitogenomic data from high throughput sequencing data☆113Sep 2, 2025Updated 6 months ago
- ☆16Nov 25, 2019Updated 6 years ago
- Detecting genome structural variants with deep learning in single molecule sequencing☆115Apr 9, 2025Updated 10 months ago
- Linear-time de novo Long Read Assembler☆41Oct 22, 2025Updated 4 months ago
- A python script for finding telomeric repeats (TTAGGG/CCCTAA) in FASTA files☆37Jun 6, 2022Updated 3 years ago
- R package to explore active transposable elements with RNA-seq data☆21Nov 25, 2022Updated 3 years ago
- transposable element typing pipeline☆19Mar 8, 2024Updated last year
- Bedfile perturbation tool☆17Sep 29, 2025Updated 5 months ago
- nanoNOMe (Nucleosome Occupancy and Methylome nanopore sequencing) Analysis☆20Nov 18, 2022Updated 3 years ago
- Transposon Insertion Finder - Detection of new TE insertions in NGS data☆20May 20, 2025Updated 9 months ago