Transposable Elements MOvement detection using LOng reads
☆25Oct 21, 2026Updated last week
Alternatives and similar repositories for TrEMOLO
Users that are interested in TrEMOLO are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Software for detecting transposable element insertions from next-generation sequencing data☆11Feb 24, 2023Updated 3 years ago
- NeSSie library and tool for the analysis of elements of sequence symmetry in nucleic-acids☆13Jun 26, 2018Updated 8 years ago
- TELR is a fast non-reference transposable element detector from long read sequencing data.☆35Jul 27, 2023Updated 3 years ago
- ☆11Jan 29, 2020Updated 6 years ago
- ☆10Jul 1, 2020Updated 6 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Meta-pipeline to identify transposable element insertions using next generation sequencing data☆107May 31, 2025Updated last year
- non-reference transposable element detection using sTELLeR☆13Nov 6, 2024Updated last year
- meta-pipeline for repetitive element de-fragmentation and annotation☆29Oct 1, 2020Updated 6 years ago
- Identify and annotate TE-mediated insertions in long-read sequence data☆48Mar 25, 2026Updated 7 months ago
- Annotation helper tool for the manual curation of transposable element consensus sequences☆57Oct 13, 2026Updated 2 weeks ago
- computational tool to identify trasposable element insertions using Hi-C data☆10Sep 17, 2020Updated 6 years ago
- PiRATE (Pipeline to Retrieve and Annotate Transposable Elements)☆21Nov 10, 2024Updated last year
- A tool for discovering transposable elements and describing patterns of genome evolution☆32Apr 23, 2023Updated 3 years ago
- TEspeX - pipeline for Transposable Elements expression quantification☆21Aug 24, 2023Updated 3 years ago
- End-to-end encrypted email - Proton Mail • AdSpecial offer: 40% Off Yearly / 80% Off First Month. All Proton services are open source and independently audited for security.
- GraffiTE is a pipeline that finds polymorphic transposable elements in genome assemblies and/or long reads, and genotypes the discovered …☆277Oct 17, 2026Updated last week
- Script for parsing and displaying node status information of the HPC Sapelo2 at UGA.☆12Nov 9, 2020Updated 5 years ago
- Pre-mAsking Long reads for Mobile Element inseRtion☆20Jul 24, 2026Updated 3 months ago
- Comprehensive TE insertion identification with WGS/WES data from multiple sequencing technics☆129Apr 17, 2026Updated 6 months ago
- rMETL - realignment-based Mobile Element insertion detection Tool for Long read☆22Aug 13, 2024Updated 2 years ago
- Earl Grey: A fully automated TE curation and annotation pipeline☆227Updated this week
- ☆10Sep 10, 2021Updated 5 years ago
- Drosophila transposable element canonical sequences☆30Jul 11, 2022Updated 4 years ago
- Python deployment tool for bespoke image curation projects, oriented toward scientific projects. Please cite https://academic.oup.com/gig…☆14Aug 6, 2022Updated 4 years ago
- GPUs on demand by Runpod - Special Offer Available • AdRun AI, ML, and HPC workloads on powerful cloud GPUs—without limits or wasted spend. Deploy GPUs in under a minute and pay by the second.
- R package to easily generate "V-plots" of paired-end sequencing data over regions of interest☆11Oct 22, 2026Updated last week
- RepEnrich2 is an updated method to estimate repetitive element enrichment using high-throughput sequencing data.☆41Feb 14, 2022Updated 4 years ago
- Estimating repeat spectra and genome length from low-coverage genome skims☆12Aug 6, 2023Updated 3 years ago
- Invertory of TE-gene isoforms☆14Sep 18, 2023Updated 3 years ago
- YAGCloser: Yet-Another-Gap-Closer based on spanning of long reads.☆13Nov 6, 2025Updated 11 months ago
- TransposonUltimate - a holistic set of tools for transposon identification☆86Mar 4, 2022Updated 4 years ago
- ☆28Feb 19, 2025Updated last year
- Detecting transposable element invasions without repeat library. Detects also horizontal transfer events and endogenized viruses. All you…☆17Nov 25, 2024Updated last year
- Detecting genome structural variants with deep learning in single molecule sequencing☆118Apr 9, 2025Updated last year
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- TE tools for TE RNASeq and smallRNASeq analysis with galaxy☆12Apr 2, 2021Updated 5 years ago
- A Julia package for handle genome graph in the GFA format.☆11Sep 2, 2022Updated 4 years ago
- An easy-to-use and interactive web application for FragPipe☆15Mar 8, 2026Updated 7 months ago
- read and analyse RepeatMasker output☆26May 22, 2023Updated 3 years ago
- ASCETIC (Agony-baSed Cancer EvoluTion InferenCe) is a novel framework for the inference of a set of statistically significant temporal pa…☆12Apr 18, 2025Updated last year
- TEMP is a software package for detecting transposable elements (TEs) insertions and excisions from pooled high-throughput sequencing dat…☆22Jul 31, 2017Updated 9 years ago
- Mobile Genetic Elements Retrieving Tool☆16Feb 11, 2026Updated 8 months ago