DrosophilaGenomeEvolution / TrEMOLOLinks
Transposable Elements MOvement detection using LOng reads
☆25Updated 4 months ago
Alternatives and similar repositories for TrEMOLO
Users that are interested in TrEMOLO are comparing it to the libraries listed below
Sorting:
- read and analyse RepeatMasker output☆27Updated 2 years ago
- TELR is a fast non-reference transposable element detector from long read sequencing data.☆35Updated 2 years ago
- ☆26Updated 9 months ago
- De novo annotation of young retrotransposons☆48Updated 3 years ago
- A Nextflow workflow to generate lift over files for any pair of genomes☆69Updated 2 weeks ago
- Code for phasing SVs with SNPs☆52Updated 5 years ago
- Compute N50/NG50 and auN/auNG☆33Updated 2 years ago
- A (very) simple script to QC Hi-C data.☆26Updated 11 months ago
- Identify and annotate TE-mediated insertions in long-read sequence data☆46Updated 5 months ago
- ☆30Updated 4 years ago
- scripts for the project of seven thaliana genomes assembly☆42Updated 4 years ago
- dnaPipeTE (for de-novo assembly & annotation Pipeline for Transposable Elements), is a pipeline designed to find, annotate and quantify T…☆59Updated 2 years ago
- R package to draw syntenic plots in 3 different styles☆42Updated 3 months ago
- A shiny application to visualize MCscan result☆37Updated 3 years ago
- Transposable element polymorphism identification☆34Updated 5 years ago
- ☆33Updated 4 years ago
- ☆31Updated last year
- methods for orphan gene prediction paper optimization☆25Updated 3 years ago
- Copy number variant caller and depth visualization utility for PacBio HiFi reads☆45Updated last year
- Error correction of ONT transcript reads☆58Updated 2 years ago
- perSVade: personalized Structural Variation detection☆40Updated 3 months ago
- An R package to identify and classify duplicated genes from whole-genome protein sequence data☆29Updated 2 months ago
- Genome scaffolding based on HiC data in heterozygous and high ploidy genomes☆60Updated 11 months ago
- ☆53Updated 5 months ago
- Simple pileup-based variant caller☆94Updated 7 months ago
- Integrate multiple genome assemblies into a pangenome graph☆35Updated 3 years ago
- A repo contains historical and updated MTEC libraries.☆18Updated 5 years ago
- Make Pseudo-Reference Genome from VCF/BCF☆14Updated 5 years ago
- calling SVs from Blasr contig level alignments☆54Updated 7 years ago
- ☆31Updated 2 months ago