DrosophilaGenomeEvolution / TrEMOLO
Transposable Elements MOvement detection using LOng reads
☆21Updated 5 months ago
Alternatives and similar repositories for TrEMOLO:
Users that are interested in TrEMOLO are comparing it to the libraries listed below
- TELR is a fast non-reference transposable element detector from long read sequencing data.☆33Updated last year
- read and analyse RepeatMasker output☆24Updated last year
- R package to draw syntenic plots in 3 different styles☆40Updated last year
- scripts for the project of seven thaliana genomes assembly☆38Updated 3 years ago
- ☆25Updated 2 months ago
- Compute N50/NG50 and auN/auNG☆31Updated last year
- methods for orphan gene prediction paper optimization☆25Updated 3 years ago
- An R package to identify and classify duplicated genes from whole-genome protein sequence data☆25Updated last month
- Python wrappers for programs that search for transposable elements☆19Updated 8 years ago
- A shiny application to visualize MCscan result☆36Updated 2 years ago
- A Nextflow workflow to generate lift over files for any pair of genomes☆65Updated last month
- Likelihood-based Selective Sweep Detection☆37Updated last year
- ☆32Updated 4 years ago
- Code for phasing SVs with SNPs☆52Updated 5 years ago
- Transposable element polymorphism identification☆33Updated 4 years ago
- Gene model transfer from closely related reference genomes using cDNA alignments☆10Updated 4 years ago
- Yet another Hi-C scaffolding tool☆19Updated 6 months ago
- Convert RepeatMasker ".out" file into a gff3 with colors!!!☆21Updated 4 years ago
- A pipeline for scaffolding a genome assembly using Hi-C☆13Updated 2 years ago
- ☆23Updated last year
- Computational Analysis of Gene Expression Evolution☆40Updated 3 weeks ago
- A repo contains historical and updated MTEC libraries.☆17Updated 5 years ago
- info and docs for the Wright Lab☆14Updated 9 years ago
- A python script for finding telomeric repeats (TTAGGG/CCCTAA) in FASTA files☆33Updated 2 years ago
- A (very) simple script to QC Hi-C data.☆25Updated 4 months ago
- calling SVs from Blasr contig level alignments☆54Updated 7 years ago
- Chromosome-level synteny plotting using orthologous regions☆29Updated 7 months ago
- A genome assembly assessment pipeline.☆37Updated last year
- dnaPipeTE (for de-novo assembly & annotation Pipeline for Transposable Elements), is a pipeline designed to find, annotate and quantify T…☆55Updated 2 years ago
- Integrate multiple genome assemblies into a pangenome graph☆34Updated 2 years ago