Transposon annotation tool "resonaTE" (part of TransposonUltimate)
☆18Mar 4, 2022Updated 4 years ago
Alternatives and similar repositories for transposon_annotation_reasonaTE
Users that are interested in transposon_annotation_reasonaTE are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Transposon classification tools RFSB, part of TransposonUltimate☆14Mar 27, 2024Updated 2 years ago
- A set of bioconda packages for transposon annotations. During my masterthesis I downloaded lots of these tools and I want to make it easi…☆14Mar 4, 2022Updated 4 years ago
- TransposonUltimate - a holistic set of tools for transposon identification☆86Mar 4, 2022Updated 4 years ago
- Transposon Insertion Finder - Detection of new TE insertions in NGS data☆21May 20, 2025Updated last year
- ☆11Nov 17, 2020Updated 5 years ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- Transposable Elements Representation Learner (TERL)☆19Jun 2, 2025Updated last year
- Working on cotton resequencing☆11Jun 2, 2020Updated 6 years ago
- PanEffect is a JavaScript framework to explore variant effects across a pangenome. The tool has two views that allows a user to (1) expl…☆13Jan 30, 2024Updated 2 years ago
- ☆11Dec 12, 2014Updated 11 years ago
- ☆36Dec 24, 2020Updated 5 years ago
- Combine structural variation outputs from long sequencing reads into a superior call set☆19Aug 6, 2025Updated last year
- ☆11Updated this week
- ☆11Dec 20, 2022Updated 3 years ago
- Scripts to do haplotype analysis on pan genomes.☆20Sep 24, 2020Updated 5 years ago
- Proton VPN Special Offer - Get 70% off • AdSpecial partner offer. Trusted by over 100 million users worldwide. Tested, Approved and Recommended by Experts.
- ☆16Oct 9, 2024Updated last year
- Annotation of cryptic transposon variants using Hidden Markov Models to detect conserved terminal features.☆10Updated this week
- Functions to extract information from Oxford Nanopore sequencing data and alignments☆11Aug 3, 2026Updated last week
- Phased structural variant discovery in pangenomes☆43Jul 27, 2026Updated 2 weeks ago
- Pipeline to phase a genome into two homeologous subgenomes. Parental genomes are required.☆10May 22, 2025Updated last year
- Network inference by fusing data from diverse distributions☆14Nov 25, 2016Updated 9 years ago
- Divide and Conquer BLAST: using grid engines to accelerate NCBI-BLAST+ and other sequence analysis tools☆11Apr 26, 2020Updated 6 years ago
- Python script calculating transposable element density for all genes in a genome. Publication: https://mobilednajournal.biomedcentral.com…☆37Sep 30, 2024Updated last year
- The RepeatScout 1.0.5, written by Pevzner et al., source code for browsing. The official release and more information are available at h…☆15Apr 14, 2023Updated 3 years ago
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- ☆20Jul 28, 2026Updated 2 weeks ago
- 🪡Correct and scaffold assemblies using long reads☆58Apr 1, 2026Updated 4 months ago
- Whole genome focused array SNP typer☆14Feb 2, 2026Updated 6 months ago
- ☆23Aug 8, 2024Updated 2 years ago
- Archived version 1.0.2☆16Nov 25, 2019Updated 6 years ago
- A python program that uses ReadBack phased haplotypes in population of samples and returns extended haplotype blocks.☆15Oct 30, 2024Updated last year
- add true-negative SVs from a population callset to a truth-set.☆14Jun 17, 2022Updated 4 years ago
- For QMUL's Genome Bioinformatics MSc module BIO721P & SIB's Spring school in bioinfo & population genomics☆13Oct 1, 2024Updated last year
- Detection of structural variants in cancer mate-pair and paired-end data☆13May 3, 2019Updated 7 years ago
- Proton VPN Special Offer - Get 70% off • AdSpecial partner offer. Trusted by over 100 million users worldwide. Tested, Approved and Recommended by Experts.
- A python package from Pacific Biosciences to analyze centromeric sequences☆21Oct 7, 2015Updated 10 years ago
- This python script can be used to detect Whole-genome duplication (WGD) with the dS based method.☆26Feb 22, 2019Updated 7 years ago
- Example code for calling Panther API services☆13Dec 12, 2023Updated 2 years ago
- Autometa: Automated Extraction of Genomes from Shotgun Metagenomes☆45Jan 24, 2025Updated last year
- DensityMap is perl tool for the visualization of features density along chromosomes☆19May 12, 2022Updated 4 years ago
- A high performance tool to identify orthologs and paralogs across genomes.☆26Mar 8, 2023Updated 3 years ago
- Transfer coordinates across genomes☆23Jun 12, 2026Updated 2 months ago