mfruzan / CoreDetector
☆25Updated 4 months ago
Related projects ⓘ
Alternatives and complementary repositories for CoreDetector
- Improved Phased Assembler☆28Updated 2 years ago
- ☆30Updated 2 weeks ago
- Plant genome assembly and annotation pipeline using snakemake☆35Updated last year
- A Hi-C scaffolding method☆22Updated 2 years ago
- ☆17Updated last month
- Pipeline to detect PAVs (presence/absence variations) in genome comparison using whole genome alignment.☆29Updated 6 years ago
- Yet another Hi-C scaffolding tool☆19Updated 3 weeks ago
- An algorithm for centromere assembly using long error-prone reads☆26Updated 3 years ago
- a tool to identify species and inter-species hybrids and chromosome copy number variants from short-read data☆17Updated 5 years ago
- Toolkit for evolutionary analyses of linkage groups☆23Updated 4 months ago
- A module for improving the insertion sequences of structural variant calls☆29Updated 3 years ago
- Genome alignment and synteny plots☆27Updated last year
- assembly evaluation tool☆34Updated 2 years ago
- Pangenome Sequence Naming: a backwards-compatible hack to simplify the identification of samples and haplotypes in pangenomes☆33Updated last month
- use variant nesting information to flter overlapping sites from vg deconstruct output☆23Updated 5 months ago
- ☆19Updated 3 months ago
- PREQUAL: a pre-alignment quality filter for comparative sequence analyses☆30Updated 2 years ago
- scripts to parse and analyse MCScanX collinearity output☆29Updated 4 years ago
- a tree splitting and pruning algorithm for retrieving single-copy orthologs from gene family trees☆24Updated 5 months ago
- ☆32Updated 8 months ago
- Lightweight mosaic/somatic SV caller for long reads (WIP)☆27Updated last week
- Convergent substitution detection tool based on the PCOC model☆29Updated 2 years ago
- R package and wrapper functions for identifying serial structural variations from genome assemblies☆25Updated 2 months ago
- a broadly applicable tool for automated gene identification and retrieval☆28Updated 4 months ago
- Software that separates very close sequences that have been collapsed during assembly. Uses only long reads.☆34Updated 3 weeks ago
- PoSeiDon: positive selection detection and recombination analysis pipeline☆35Updated 3 weeks ago
- Convert RepeatMasker ".out" file into a gff3 with colors!!!☆19Updated 4 years ago
- Tool for fully-automated inference of species trees from raw genome assemblies☆20Updated this week
- We developed GenomeSyn as a new tool for constructing and visualizing genome synteny, its novel design and implementation can serve as a …☆23Updated 2 years ago
- implicit pangenome graph☆44Updated 2 weeks ago