AlexanderLabWHOI / EUKuleleLinks
Automatic eukaryotic taxonomic classification
☆28Updated 4 months ago
Alternatives and similar repositories for EUKulele
Users that are interested in EUKulele are comparing it to the libraries listed below
Sorting:
- Structural and functional annotation of eukaryotic metagenome-assembled genomes☆22Updated 2 years ago
- ☆24Updated 6 years ago
- Downstream processing of VAMB binning for Viral Elucidation☆50Updated last year
- EzAAI - High Throughput Prokaryotic AAI Calculator☆44Updated last month
- Classify metagenomic contigs as eukaryotic or prokaryotic☆39Updated 2 years ago
- zol (& fai): large-scale targeted detection and evolutionary investigation of gene clusters (i.e. BGCs, phages, etc.)☆62Updated last week
- ☆26Updated 2 years ago
- skDER & CiDDER: efficient & high-resolution dereplication of microbial genomes.☆48Updated last week
- A workflow and scripts for large-scale antiSMASH analyses☆42Updated 5 months ago
- Prophage Activity Estimator☆26Updated last year
- Rapid and simple taxonomic profiling of genome and metagenome contigs☆29Updated 2 years ago
- BinaRena: Interactive Visualization and Binning of Metagenomic Contigs☆32Updated last year
- Python script to upload bins and MAGs to ENA (European Nucleotide Archive)☆25Updated this week
- MAG Circularization Method☆32Updated 3 years ago
- Improvement of metagenome-assembled genomes☆53Updated 5 years ago
- MetaGeneMark-2: Improved Gene Prediction in Metagenomes☆22Updated last year
- Hydrocarbon biodegradation gene annotation☆18Updated 3 years ago
- Calculate assocations between genes and traits☆25Updated 6 months ago
- SCAPP is a plasmid assembly tool. This tool is described in our paper: https://microbiomejournal.biomedcentral.com/articles/10.1186/s4016…☆34Updated 2 years ago
- KEGG Module Evaluation Tool☆31Updated last year
- MAGScoT - a MAG scoring and refinement tool☆36Updated 11 months ago
- A comprehensive bacterial core gene-set annotation pipeline based on Roary and pairwise ILPs☆30Updated 10 months ago
- Core ELEment Bias Removal In Metagenome Binned ORthologs: A pipeline to make pangenomes from MAGs☆25Updated last year
- Remove contaminated contigs from genomes using k-mers and taxonomies.☆58Updated last year
- PlasX, a machine learning classifier for identifying plasmid sequences based on genetic architecture☆37Updated 3 years ago
- MDMcleaner the assessment, classification and refinement tool for microbial dark matter SAGs and MAGs☆23Updated 2 years ago
- IslandPath standalone software☆33Updated last year
- Bacterial GWAS analysis☆43Updated last month
- Discover and annotate the virome☆49Updated 3 weeks ago
- A toolkit for prokaryotic comparative genomics☆50Updated 7 months ago