AlexanderLabWHOI / EUKuleleLinks
Automatic eukaryotic taxonomic classification
☆28Updated 5 months ago
Alternatives and similar repositories for EUKulele
Users that are interested in EUKulele are comparing it to the libraries listed below
Sorting:
- ☆26Updated 2 years ago
- ☆24Updated 6 years ago
- zol (& fai): large-scale targeted detection and evolutionary investigation of gene clusters (i.e. BGCs, phages, etc.)☆63Updated last week
- Classify metagenomic contigs as eukaryotic or prokaryotic☆41Updated 2 years ago
- Downstream processing of VAMB binning for Viral Elucidation☆50Updated last year
- Prophage Activity Estimator☆27Updated last year
- Python script to upload bins and MAGs to ENA (European Nucleotide Archive)☆25Updated this week
- Improvement of metagenome-assembled genomes☆54Updated 5 years ago
- Calculate assocations between genes and traits☆28Updated 7 months ago
- MAG Circularization Method☆32Updated 3 years ago
- ☆45Updated 2 years ago
- Hydrocarbon biodegradation gene annotation☆18Updated 3 years ago
- EzAAI - High Throughput Prokaryotic AAI Calculator☆44Updated 2 months ago
- BEAV: Bacterial Element Annotation reVamped☆69Updated last month
- Structural and functional annotation of eukaryotic metagenome-assembled genomes☆22Updated 2 years ago
- A comprehensive bacterial core gene-set annotation pipeline based on Roary and pairwise ILPs☆30Updated last week
- Bacterial GWAS analysis☆44Updated 2 months ago
- SCAPP is a plasmid assembly tool. This tool is described in our paper: https://microbiomejournal.biomedcentral.com/articles/10.1186/s4016…☆34Updated 2 years ago
- Discover and annotate the virome☆53Updated this week
- Melon: metagenomic long-read-based taxonomic identification and quantification using marker genes☆35Updated 5 months ago
- More scalable dereplication for metagenome assembled genomes☆70Updated this week
- Predicting plasmid contigs from assemblies using single copy marker genes, plasmid genes, kmers - Developed by Linda van der Graaf☆49Updated last year
- Rapid and simple taxonomic profiling of genome and metagenome contigs☆29Updated 2 years ago
- A toolkit for prokaryotic comparative genomics☆51Updated last week
- A workflow and scripts for large-scale antiSMASH analyses☆42Updated 6 months ago
- Tool to estimate genome quality of microbial eukaryotes☆38Updated 2 months ago
- MetaGeneMark-2: Improved Gene Prediction in Metagenomes☆22Updated last year
- PlasX, a machine learning classifier for identifying plasmid sequences based on genetic architecture☆38Updated 3 years ago
- Core ELEment Bias Removal In Metagenome Binned ORthologs: A pipeline to make pangenomes from MAGs☆25Updated last year
- KEGG Module Evaluation Tool☆31Updated last year