An algorithm for clustering metagenomic sequences.
☆43Aug 5, 2026Updated 3 weeks ago
Alternatives and similar repositories for MetaDecoder
Users that are interested in MetaDecoder are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- ☆65Feb 27, 2024Updated 2 years ago
- SemiBin: metagenomics binning with self-supervised deep learning☆174Aug 3, 2026Updated 3 weeks ago
- MAGScoT - a MAG scoring and refinement tool☆49Apr 8, 2026Updated 4 months ago
- ☆33Jul 16, 2023Updated 3 years ago
- ☆83Aug 23, 2026Updated last week
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- Bin Chicken - recovery of low abundance and taxonomically targeted metagenome assembled genomes (MAGs) through strategic coassembly☆79Jul 29, 2026Updated last month
- A fast and accurate binning refinement tool to constructs high quality MAGs from the output of multiple binning tools.☆55Jul 10, 2026Updated last month
- ☆23Sep 19, 2025Updated 11 months ago
- ☆27Jun 20, 2023Updated 3 years ago
- Assessing the quality of metagenome-derived genome bins using machine learning☆276Mar 20, 2025Updated last year
- Workflow for MAG quality assessment and taxonomical annotation.☆15May 26, 2026Updated 3 months ago
- From dereplication to genome enrichment: Enhancing genome recovery across metagenomic samples using MAGmax☆37Updated this week
- ☆21Dec 15, 2020Updated 5 years ago
- Ensemble binning strategies for combining the output of multiple binning methods.☆22Mar 11, 2023Updated 3 years ago
- Bare Metal GPUs on DigitalOcean Gradient AI • AdPurpose-built for serious AI teams training foundational models, running large-scale inference, and pushing the boundaries of what's possible.
- Fast pairwise transmission inference from single genome and/or metagenomic data☆37Aug 21, 2026Updated last week
- Metagenomic Binning Algorithm☆55Updated this week
- Variational autoencoder for metagenomic binning☆331Apr 27, 2026Updated 4 months ago
- MDMcleaner the assessment, classification and refinement tool for microbial dark matter SAGs and MAGs☆25Mar 19, 2023Updated 3 years ago
- Eukfinder: A pipeline to retrieve microbial eukaryote genomes from metagenomic sequencing data☆29Jan 15, 2026Updated 7 months ago
- AMBER: Assessment of Metagenome BinnERs☆33Jun 23, 2026Updated 2 months ago
- skDER & CiDDER: efficient & high-resolution dereplication of microbial genomes.☆62Updated this week
- LRBinner is a long-read binning tool published in WABI 2021 proceedings and AMB.☆33Aug 10, 2026Updated 3 weeks ago
- ☆15Oct 14, 2023Updated 2 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Autometa: Automated Extraction of Genomes from Shotgun Metagenomes☆45Jan 24, 2025Updated last year
- BinaRena: Interactive Visualization and Binning of Metagenomic Contigs☆33Aug 22, 2024Updated 2 years ago
- ☆21Jul 23, 2026Updated last month
- Pathogenfinder2☆19Apr 20, 2026Updated 4 months ago
- Python code for versatile Functional Ontology Assignments for Metagenomes searching via Hidden Markov Model (HMM) with environmental focu…☆66Apr 22, 2026Updated 4 months ago
- Computation of average nucleotide identity with the use of MMseqs2☆24Dec 11, 2024Updated last year
- MAG Circularization Method☆33Nov 4, 2025Updated 9 months ago
- Strain-level haplotyping for metagenomes with short or long-reads.☆70Apr 10, 2025Updated last year
- ☆43Feb 14, 2021Updated 5 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- A modular end-to-end suite for in silico recovery, clustering, and analysis of prokaryotic, microeukaryotic, and viral genomes from metag…☆107Jul 14, 2026Updated last month
- Read alignment statistics for metagenomics☆405Jul 10, 2026Updated last month
- A Nextflow pipeline designed to classify, align and assemble nanopore metagenomic reads.☆17Mar 18, 2025Updated last year
- Set of utilities on sequences and BAM files☆27Oct 27, 2021Updated 4 years ago
- Improvement of metagenome-assembled genomes☆57Mar 17, 2020Updated 6 years ago
- Fast, robust ANI and aligned fraction for (metagenomic) genomes and contigs.☆263May 13, 2026Updated 3 months ago
- Identify and remove contaminants from metagenome-assembled genomes☆18Feb 16, 2024Updated 2 years ago