Alternatives and similar repositories for MetaDecoder:

Users that are interested in MetaDecoder are comparing it to the libraries listed below

• ziyewang / MetaBinner
  ☆52Updated last year
• endixk / ezaai
  EzAAI - High Throughput Prokaryotic AAI Calculator
  ☆40Updated 6 months ago
• RasmussenLab / phamb
  Downstream processing of VAMB binning for Viral Elucidation
  ☆49Updated 9 months ago
• shenwei356 / gtdb-taxdump
  GTDB taxonomy taxdump files with trackable TaxIds
  ☆52Updated last year
• apcamargo / ictv-mmseqs2-protein-database
  ☆30Updated 2 months ago
• gatech-genemark / MetaGeneMark-2
  MetaGeneMark-2: Improved Gene Prediction in Metagenomes
  ☆21Updated last year
• SegataLab / panphlan
  PanPhlAn is a strain-level metagenomic profiling tool for identifying the gene composition of individual strains in metagenomic samples
  ☆45Updated last year
• Matteopaluh / KEMET
  KEGG Module Evaluation Tool
  ☆29Updated last year
• feargalr / Demovir
  Taxonomic classification of viruses at Order and Family level
  ☆20Updated 2 years ago
• allind / EukDetect
  ☆50Updated last year
• Yasas1994 / Jaeger
  Jaeger is a quick and precise tool for detecting phages in sequence assemblies.
  ☆29Updated this week
• irycisBioinfo / PATO
  PATO is a R package designed to analyze pangenomes (set of genomes) intra or inter species.
  ☆58Updated last year
• XiaofangJ / PhaseFinder
  A pipeline to computationally identify invertible DNA regions and quantify their orientations.
  ☆29Updated last year
• michaelkyu / PlasX
  PlasX, a machine learning classifier for identifying plasmid sequences based on genetic architecture
  ☆33Updated 3 years ago
• Shamir-Lab / SCAPP
  SCAPP is a plasmid assembly tool. This tool is described in our paper: https://microbiomejournal.biomedcentral.com/articles/10.1186/s4016…
  ☆31Updated 2 years ago
• ziyewang / COMEBin
  ☆52Updated last year
• bvalot / pyMLST
  whole genome MLST analysis
  ☆41Updated 3 weeks ago
• samnooij / PathoFact
  Altered version of PathoFact to work more conveniently with SLURM and large input files
  ☆12Updated 5 months ago
• tseemann / phastaf
  Identify phage regions in bacterial genomes for masking purposes
  ☆30Updated 5 years ago
• AnantharamanLab / vRhyme
  Binning Virus Genomes from Metagenomes
  ☆62Updated 2 years ago
• chengsly / DeepMicroClass
  ☆28Updated 2 months ago
• brinkmanlab / islandpath
  IslandPath standalone software
  ☆32Updated last year
• gbouras13 / plassembler
  Program to quickly and accurately assemble plasmids in hybrid and long-only sequenced bacterial isolates
  ☆61Updated 3 months ago
• snayfach / UHGV
  Unified Human Gut Virome Catalog
  ☆28Updated 9 months ago
• nekokoe / Plasmer
  An accurate and sensitive bacterial plasmid identification tool based on deep machine-learning of shared k-mers and genomic features.
  ☆43Updated 2 years ago
• wandreopoulos / deeplasmid
  ☆20Updated 7 months ago
• P-kai / EasyNanoMeta
  A pipeline for nanopore long-read metagenomic analysis.
  ☆35Updated 4 months ago
• metaGmetapop / metapop
  A pipeline for the macro- and micro-diversity analyses and visualization of metagenomic-derived populations
  ☆40Updated 2 years ago
• AnantharamanLab / PropagAtE
  Prophage Activity Estimator
  ☆26Updated 10 months ago
• cultivarium / MicrobeMod
  A toolkit for exploring prokaryotic methylation and base modifications in nanopore sequencing
  ☆47Updated 3 months ago