alexcritschristoph / MicrobialGenomicsScriptsLinks
A selection of short scripts for analyzing microbial genomes
☆14Updated 7 years ago
Alternatives and similar repositories for MicrobialGenomicsScripts
Users that are interested in MicrobialGenomicsScripts are comparing it to the libraries listed below
Sorting:
- Identifying ViRal and Circular content in metAgenomes☆14Updated 6 years ago
- Core ELEment Bias Removal In Metagenome Binned ORthologs: A pipeline to make pangenomes from MAGs☆24Updated 11 months ago
- Get microbial sequence data easier and faster☆28Updated 5 years ago
- BiG-MEx implementation as Docker images and R packages☆13Updated 3 years ago
- Rapid and simple taxonomic profiling of genome and metagenome contigs☆28Updated 2 years ago
- MAG Circularization Method☆33Updated 3 years ago
- SpydrPick: mutual information based detection of pairs of genomic loci co-evolving under a shared selective pressure.☆13Updated 3 years ago
- Detect contigs of complete circular genomes☆23Updated 6 years ago
- BinaRena: Interactive Visualization and Binning of Metagenomic Contigs☆32Updated 10 months ago
- PLSDB pipeline to collect bacterial plasmids from NCBI☆38Updated 8 months ago
- Bacterial genomes finishing tool for structural insights on draft genomes☆24Updated last year
- Interactive, web tool for exploring pan-genome of bacterial strains☆45Updated 2 years ago
- Masks recombination as detected by ClonalFrameML or Gubbins and draws an SVG☆20Updated 6 years ago
- ☆45Updated 2 years ago
- strain-level analysis tools☆38Updated 8 months ago
- Strain Resolution ON Graphs☆48Updated last year
- Please use mmgenome2 instead. Tools for extracting individual genomes from metagenomes☆27Updated 7 years ago
- 🍊 💫 Trim, circularise and orient long read bacterial genome assemblies☆26Updated 5 years ago
- GRIMER performs analysis of microbiome studies and generates a portable and interactive dashboard integrating annotation, taxonomy and me…☆23Updated 2 years ago
- IslandPath standalone software☆32Updated last year
- Prophage Activity Estimator☆26Updated last year
- Gene-flank analysis tool☆27Updated 6 months ago
- Microbial agile accurate SNP Typer☆29Updated last year
- Ley Lab MetaGenome Profiler DataBase generator☆50Updated 2 years ago
- ☆43Updated last year
- Automatic eukaryotic taxonomic classification☆29Updated last month
- Small pipeline to cluster viral genomes based on their k-mer content. WiP☆16Updated last week
- Fast and space-efficient taxonomic classification of long reads☆43Updated last month
- Bacterial GWAS analysis☆40Updated last month
- Assembly based core genome SNP alignments for bacteria☆25Updated 5 years ago