AstrobioMike / GToTree
A user-friendly workflow for phylogenomics
☆209Updated this week
Alternatives and similar repositories for GToTree:
Users that are interested in GToTree are comparing it to the libraries listed below
- An updated pipeline for pangenome investigation☆288Updated 2 weeks ago
- Bacterial ribosomal RNA predictor☆238Updated last year
- Highly parallelised multi-taxonomic profiling of shotgun short- and long-read metagenomic data☆138Updated last week
- A tool for generating consensus long-read assemblies for bacterial genomes☆316Updated 9 months ago
- Pipeline for metabolic annotation of microbial genomes☆143Updated 8 months ago
- Pan-genome wide association studies☆191Updated 9 months ago
- Tool to plot synteny and structural rearrangements between genomes☆300Updated last month
- BSR-Based Allele Calling Algorithm☆140Updated last week
- Convert various sequence formats to FASTA☆132Updated 2 years ago
- Modular command-line solution for visualisation, quality control and taxonomic partitioning of genome datasets☆197Updated 7 months ago
- CAT/BAT/RAT: tools for taxonomic classification of contigs and metagenome-assembled genomes (MAGs) and for taxonomic profiling of metage…☆204Updated 3 months ago
- Processing pipeline for pan-genome visulization and exploration☆138Updated last year
- Tools and pipelines tailored to using PacBio HiFi Reads for metagenomics☆183Updated last month
- Genome Assembly and Annotation Service code☆209Updated last year
- breseq is a computational pipeline for finding mutations relative to a reference sequence in short-read DNA resequencing data. It is inte…☆158Updated this week
- bioBakery workflows is a collection of workflows and tasks for executing common microbial community analyses using standardized, validate…☆110Updated last month
- A robust, extensible metagenomics pipeline☆169Updated 7 months ago
- Precise phylogenetic analysis of microbial isolates and genomes from metagenomes☆133Updated 3 months ago
- DAS Tool☆146Updated 10 months ago
- Assembly and intrahost/low-frequency variant calling for viral samples☆133Updated last month
- ultrafast taxonomic profiling and genome querying for metagenomic samples by abundance-corrected minhash.☆214Updated last week
- Scan contig files against PubMLST typing schemes☆219Updated 2 years ago
- HUMAnN is the next generation of HUMAnN 1.0 (HMP Unified Metabolic Analysis Network).☆187Updated 7 months ago
- FunGAP: fungal Genome Annotation Pipeline☆109Updated last year
- Bioinformatics program inStrain☆159Updated this week
- In this repo you will find demos and tutorials prepared by members of the CBIB. Feel free to use them for non-commercial activities given…☆82Updated 6 years ago
- Build a partitioned pangenome graph from microbial genomes☆260Updated last week
- Making whole bacterial genome sequencing data analysis easy☆103Updated 4 months ago
- GET_HOMOLOGUES: a versatile software package for pan-genome analysis☆113Updated 2 weeks ago
- Eukaryotic Genome Annotation Pipeline☆338Updated 2 weeks ago