A user-friendly workflow for phylogenomics
☆234Sep 28, 2026Updated last week
Alternatives and similar repositories for GToTree
Users that are interested in GToTree are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- All of my various bioinformatic scripts fit for public consumption (loosely defining "fit")☆83Mar 2, 2023Updated 3 years ago
- Bioinformatics Tools☆91Updated this week
- ATLAS - Three commands to start analyzing your metagenome data☆405May 28, 2026Updated 4 months ago
- Distilled and Refined Annotation of Metabolism: A tool for the annotation and curation of function for microbial and viral genomes☆342Oct 3, 2026Updated last week
- Assessing the quality of metagenome-derived genome bins using machine learning☆280Mar 20, 2025Updated last year
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Rapid & standardized annotation of bacterial genomes, MAGs & plasmids☆683Aug 7, 2026Updated 2 months ago
- Read alignment statistics for metagenomics☆406Sep 23, 2026Updated 2 weeks ago
- A hybrid assembly and MAG recovery pipeline (and more!)☆120Updated this week
- DAS Tool☆176May 2, 2024Updated 2 years ago
- ultrafast taxonomic profiling and genome querying for metagenomic samples by abundance-corrected minhash.☆325Updated this week
- Cython bindings and Python interface to Prodigal, an ORF finder for genomes and metagenomes. Now with SIMD!☆188Mar 17, 2026Updated 6 months ago
- Generic but comprehensive pipeline for prokaryotic genome annotation and interrogation with interactive reports and shiny app.☆108Jan 22, 2026Updated 8 months ago
- Gene cluster comparison figure generator☆655Updated this week
- BEAV: Bacterial Element Annotation reVamped☆78Aug 21, 2025Updated last year
- Simple, predictable pricing with DigitalOcean hosting • AdAlways know what you'll pay with monthly caps and flat pricing. Enterprise-grade infrastructure trusted by 600k+ customers.
- Fast, robust ANI and aligned fraction for (metagenomic) genomes and contigs.☆264May 13, 2026Updated 4 months ago
- phyloFlash - A pipeline to rapidly reconstruct the SSU rRNAs and explore phylogenetic composition of an illumina (meta)genomic dataset.☆90Oct 27, 2023Updated 2 years ago
- SemiBin: metagenomics binning with self-supervised deep learning☆175Oct 1, 2026Updated last week
- ☆27Jun 20, 2023Updated 3 years ago
- Assess the quality of microbial genomes recovered from isolates, single cells, and metagenomes☆410Mar 2, 2026Updated 7 months ago
- Autometa: Automated Extraction of Genomes from Shotgun Metagenomes☆45Jan 24, 2025Updated last year
- Rapid comparison and dereplication of genomes☆358Updated this week
- A scalable high-throughput metabolic and biogeochemical functional trait profiler☆232Mar 24, 2026Updated 6 months ago
- Novelty-inclusive microbial (and now dsDNA phage) community profiling of shotgun metagenomes☆195Sep 8, 2026Updated last month
- Serverless GPU API endpoints on Runpod - Get Bonus Credits • AdSkip the infrastructure headaches. Auto-scaling, pay-as-you-go, no-ops approach lets you focus on innovating your application.
- A complete pipeline for metagenomic analysis☆453Aug 28, 2026Updated last month
- An updated pipeline for pangenome investigation☆375Jul 2, 2026Updated 3 months ago
- CAT/BAT/RAT: tools for taxonomic classification of contigs and metagenome-assembled genomes (MAGs) and for taxonomic profiling of metage…☆236Updated this week
- Phylogenetic Organization of Metagenomic Signals (POMS)☆18Dec 19, 2022Updated 3 years ago
- alignment-free coverage calculation for metagenomic binning >100 times faster☆58May 8, 2026Updated 5 months ago
- geNomad: Identification of mobile genetic elements☆336Mar 29, 2026Updated 6 months ago
- Quickly search, compare, and analyze genomic and metagenomic data sets.☆556Updated this week
- Bioinformatics program inStrain☆192Updated this week
- customizable pipeline to identify viral sequences from (meta)genomic data☆299Nov 28, 2024Updated last year
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- MetaEuk - sensitive, high-throughput gene discovery and annotation for large-scale eukaryotic metagenomics☆211Sep 22, 2026Updated 2 weeks ago
- GenoVi, an automated customizable circular genome visualizer for bacteria and archaea☆110Jun 25, 2023Updated 3 years ago
- frame-shift correction for long-read (meta)genomics☆33Dec 11, 2023Updated 2 years ago
- A comprehensive prokaryotic genome annotation pipeline☆92Sep 4, 2026Updated last month
- A toolbox for pangenome analysis and threshold evaluation.☆102Jul 8, 2022Updated 4 years ago
- Remove contaminated contigs from genomes using k-mers and taxonomies.☆60Nov 3, 2023Updated 2 years ago
- Tool to estimate genome quality of microbial eukaryotes☆47Aug 14, 2026Updated last month