Alternatives and similar repositories for GToTree

Users that are interested in GToTree are comparing it to the libraries listed below

• AdmiralenOla / Scoary
  Pan-genome wide association studies
  ☆202Updated last year
• gtonkinhill / panaroo
  An updated pipeline for pangenome investigation
  ☆309Updated 5 months ago
• MGXlab / CAT_pack
  CAT/BAT/RAT: tools for taxonomic classification of contigs and metagenome-assembled genomes (MAGs) and for taxonomic profiling of metage…
  ☆219Updated last month
• cruizperez / MicrobeAnnotator
  Pipeline for metabolic annotation of microbial genomes
  ☆150Updated 5 months ago
• B-UMMI / chewBBACA
  BSR-Based Allele Calling Algorithm
  ☆149Updated 3 weeks ago
• biobakery / phylophlan
  Precise phylogenetic analysis of microbial isolates and genomes from metagenomes
  ☆154Updated 2 months ago
• tseemann / barrnap
  Bacterial ribosomal RNA predictor
  ☆252Updated last year
• nf-core / taxprofiler
  Highly parallelised multi-taxonomic profiling of shotgun short- and long-read metagenomic data
  ☆161Updated last week
• MrOlm / inStrain
  Bioinformatics program inStrain
  ☆174Updated 3 months ago
• tseemann / any2fasta
  Convert various sequence formats to FASTA
  ☆138Updated 3 years ago
• phac-nml / staramr
  Scans genome contigs against the ResFinder, PlasmidFinder, and PointFinder databases.
  ☆164Updated 8 months ago
• nickjcroucher / gubbins
  Rapid phylogenetic analysis of large samples of recombinant bacterial whole genome sequences using Gubbins
  ☆200Updated last week
• labgem / PPanGGOLiN
  Build a partitioned pangenome graph from microbial genomes
  ☆276Updated this week
• bluenote-1577 / sylph
  ultrafast taxonomic profiling and genome querying for metagenomic samples by abundance-corrected minhash.
  ☆244Updated last month
• linnabrown / run_dbcan
  Run_dbcan V4, using genomes/metagenomes/proteomes of any assembled organisms (prokaryotes, fungi, plants, animals, viruses) to search for…
  ☆154Updated 4 months ago
• rrwick / Trycycler
  A tool for generating consensus long-read assemblies for bacterial genomes
  ☆331Updated last year
• cmks / DAS_Tool
  DAS Tool
  ☆156Updated last year
• CAMI-challenge / CAMISIM
  CAMISIM: Simulating metagenomes and microbial communities
  ☆214Updated last month
• PacificBiosciences / pb-metagenomics-tools
  Tools and pipelines tailored to using PacBio HiFi Reads for metagenomics
  ☆193Updated last month
• wwood / singlem
  Novelty-inclusive microbial (and now dsDNA phage) community profiling of shotgun metagenomes
  ☆161Updated last week
• motu-tool / mOTUs
  motus - a tool for marker gene-based OTU (mOTU) profiling
  ☆157Updated last year
• DRL / blobtools
  Modular command-line solution for visualisation, quality control and taxonomic partitioning of genome datasets
  ☆204Updated last year
• neherlab / pan-genome-analysis
  Processing pipeline for pan-genome visulization and exploration
  ☆141Updated last year
• tseemann / shovill
  ⚡♠️ Assemble bacterial isolate genomes from Illumina paired-end reads
  ☆233Updated 2 years ago
• chklovski / CheckM2
  Assessing the quality of metagenome-derived genome bins using machine learning
  ☆222Updated 5 months ago
• AnantharamanLab / VIBRANT
  Virus Identification By iteRative ANnoTation
  ☆171Updated last year
• rrwick / Perfect-bacterial-genome-tutorial
  ☆143Updated last year
• aineniamh / snipit
  snipit: summarise snps relative to your reference sequence
  ☆164Updated 3 months ago
• biobakery / biobakery_workflows
  bioBakery workflows is a collection of workflows and tasks for executing common microbial community analyses using standardized, validate…
  ☆117Updated 2 months ago
• sunbeam-labs / sunbeam
  A robust, extensible metagenomics pipeline
  ☆174Updated last week