anuradhawick / LRBinnerLinks
LRBinner is a long-read binning tool published in WABI 2021 proceedings and AMB.
☆32Updated 2 years ago
Alternatives and similar repositories for LRBinner
Users that are interested in LRBinner are comparing it to the libraries listed below
Sorting:
- kmer based feature extraction tool for bioinformatics, metagenomics, AI/ML and more☆33Updated 2 weeks ago
- Reference-free Binning of Metagenomics Long Reads using Coverage and Composition☆20Updated last year
- Strain-level haplotyping for metagenomes with short or long-reads.☆55Updated 5 months ago
- Non-redundant pangenome assemblies from multiple genomes or bins☆13Updated 4 months ago
- sunburst plots for taxonomy - working to update Krona☆39Updated 2 weeks ago
- Fast long-read mapper and whole-genome aligner (accelerated version of minimap2)☆35Updated 3 months ago
- Genome size estimation from long read overlaps☆61Updated 2 weeks ago
- Fast and space-efficient taxonomic classification of long reads☆43Updated last month
- k-mer based Pipeline to identify the Serotype from Illumina NGS reads☆25Updated 2 years ago
- Remove human reads from a sequencing run☆40Updated 2 months ago
- Olivar: towards automated variant aware primer design for multiplex tiled amplicon sequencing of pathogens☆29Updated last month
- A Python implementation of the OrthoANI algorithm for nucleotide identity measurement.☆30Updated 2 months ago
- 🚦🧬 Binning Metagenomic Contigs via Composition, Coverage and Assembly Graphs☆65Updated last year
- A mathematically characterized hypothesis test for organism presence/absence in a metagenome☆32Updated last month
- Mandrake 🌿/👨🔬🦆 – Fast visualisation of the population structure of pathogens using Stochastic Cluster Embedding☆38Updated 7 months ago
- AMBER: Assessment of Metagenome BinnERs☆31Updated 8 months ago
- PanTax: Strain-level metagenomic profiling using pangenome graphs☆43Updated last month
- A streamlined workflow and GUI for real-time species identification and pathogen characterization via nanopore sequencing data. Engineere…☆18Updated last year
- extract MSAs from genome variation graphs☆33Updated 5 years ago
- Indels are not ideal - quick test for interrupted ORFs in bacterial/microbial genomes☆15Updated 7 years ago
- Software that separates very close sequences that have been collapsed during assembly. Uses only long reads.☆35Updated 5 months ago
- Assembling the cause of phenotypes and genotypes from NGS data☆29Updated 5 years ago
- Population analysis PIPEline 🛠🧬☆22Updated 5 months ago
- Remove contaminated contigs from genomes using k-mers and taxonomies.☆59Updated last year
- A toolkit for quality control & adjustment of nucleotide redundancy in bacterial pan-genome analyses☆19Updated last year
- Library of sketching functions used by PopPUNK☆30Updated 6 months ago
- Panache is a web-based interface designed for the visualization of linearized pangenomes. It can be used to show presence/absence informa…☆45Updated 2 years ago
- fast, multithreaded sourmash operations: search, compare, and gather.☆23Updated last week
- Automated strain separation of low-complexity metagenomes☆50Updated 3 years ago
- Fast viral consensus genome reconstruction☆25Updated 3 months ago