anuradhawick / LRBinnerLinks
LRBinner is a long-read binning tool published in WABI 2021 proceedings and AMB.
☆33Updated 2 years ago
Alternatives and similar repositories for LRBinner
Users that are interested in LRBinner are comparing it to the libraries listed below
Sorting:
- Reference-free Binning of Metagenomics Long Reads using Coverage and Composition☆21Updated 10 months ago
- kmer based feature extraction tool for bioinformatics, metagenomics, AI/ML and more☆32Updated 7 months ago
- Assessing and Improving the quality of metagenomic assemblies☆29Updated 3 years ago
- AMBER: Assessment of Metagenome BinnERs☆31Updated 6 months ago
- Strain-level haplotyping for metagenomes with short or long-reads.☆52Updated 3 months ago
- Strain Resolution ON Graphs☆48Updated 2 years ago
- A mathematically characterized hypothesis test for organism presence/absence in a metagenome☆30Updated 2 months ago
- Genome size estimation from long read overlaps☆58Updated 2 weeks ago
- Fast and space-efficient taxonomic classification of long reads☆43Updated 2 months ago
- 🚦🧬 Binning Metagenomic Contigs via Composition, Coverage and Assembly Graphs☆63Updated 9 months ago
- Assembling the cause of phenotypes and genotypes from NGS data☆29Updated 5 years ago
- Non-redundant pangenome assemblies from multiple genomes or bins☆13Updated 2 months ago
- Minimizer-based assembly scaffolding and mapping using long reads☆42Updated 9 months ago
- 🪡Correct and scaffold assemblies using long reads☆55Updated last year
- Remove contaminated contigs from genomes using k-mers and taxonomies.☆59Updated last year
- Read mapping pipeline for detection and measurement of virus pathogens from metagenomic or clinical data☆28Updated 2 weeks ago
- Automated strain separation of low-complexity metagenomes☆51Updated 3 years ago
- Python package to plot a phylogenetic tree on an existing matplotlib axis.☆23Updated this week
- Mash MinHash search your nucleotide sequences against a NCBI RefSeq genomes database☆42Updated 4 years ago
- MetaCompass: Reference-guided Assembly of Metagenomes