Alternatives and similar repositories for LRBinner

Users that are interested in LRBinner are comparing it to the libraries listed below

• anuradhawick / MetaBCC-LR
  Reference-free Binning of Metagenomics Long Reads using Coverage and Composition
  ☆20Updated last year
• anuradhawick / kmertools
  kmer based feature extraction tool for bioinformatics, metagenomics, AI/ML and more
  ☆41Updated 2 weeks ago
• CAMI-challenge / AMBER
  AMBER: Assessment of Metagenome BinnERs
  ☆31Updated 10 months ago
• taxburst / taxburst
  sunburst plots for taxonomy - working to update Krona
  ☆41Updated last month
• bluenote-1577 / floria
  Strain-level haplotyping for metagenomes with short or long-reads.
  ☆56Updated 7 months ago
• pierrepeterlongo / back_to_sequences
  ☆45Updated this week
• SouthGreenPlatform / panache
  Panache is a web-based interface designed for the visualization of linearized pangenomes. It can be used to show presence/absence informa…
  ☆45Updated 2 years ago
• at-cg / mm2-plus
  Fast long-read mapper and whole-genome aligner (accelerated version of minimap2)
  ☆35Updated 4 months ago
• phac-nml / refseq_masher
  Mash MinHash search your nucleotide sequences against a NCBI RefSeq genomes database
  ☆42Updated 4 years ago
• pangenome / maffer
  extract MSAs from genome variation graphs
  ☆34Updated 5 years ago
• flu-crew / parnas
  Phylogenetic maximum representation sampling: choosing most representative strains or taxa
  ☆40Updated last month
• marbl / MetaCompass
  MetaCompass: Reference-guided Assembly of Metagenomes
  ☆40Updated 3 months ago
• nlapier2 / Metalign
  Metalign: efficient alignment-based metagenomic profiling via containment min hash
  ☆33Updated 2 years ago
• bcgsc / LongStitch
  🪡Correct and scaffold assemblies using long reads
  ☆56Updated 2 months ago
• rvicedomini / strainberry
  Automated strain separation of low-complexity metagenomes
  ☆53Updated 4 years ago
• katerinakazantseva / strainy
  Graph-based assembly phasing
  ☆90Updated 6 months ago
• metagentools / MetaCoAG
  🚦🧬 Binning Metagenomic Contigs via Composition, Coverage and Assembly Graphs
  ☆67Updated last year
• KatyBrown / plot_phylo
  Python package to plot a phylogenetic tree on an existing matplotlib axis.
  ☆26Updated 3 months ago
• gatech-genemark / GeneMark-ETP
  GeneMark-ETP: gene finding in eukaryotic genomes supported by transcriptome sequencing and protein homology
  ☆25Updated 7 months ago
• RolandFaure / Hairsplitter
  Software that separates very close sequences that have been collapsed during assembly. Uses only long reads.
  ☆35Updated 6 months ago
• sanger-pathogens / plasmidtron
  Assembling the cause of phenotypes and genotypes from NGS data
  ☆29Updated 5 years ago
• fpusan / SuperPang
  Non-redundant pangenome assemblies from multiple genomes or bins
  ☆14Updated 6 months ago
• moshi4 / MGCplotter
  Microbial Genome Circular plotting tool for comparative genomics using Circos
  ☆38Updated 2 years ago
• josephpetrone / RESCUE
  Resolving Species Level Classification Using Emu
  ☆14Updated last year
• uio-cels / NucDiff
  In-depth characterization and annotation of differences between two sets of DNA sequences
  ☆63Updated 5 years ago
• mdcao / npScarf
  ☆26Updated 6 years ago
• dib-lab / charcoal
  Remove contaminated contigs from genomes using k-mers and taxonomies.
  ☆59Updated 2 years ago
• tlemane / kmdiff
  Differential k-mer analysis
  ☆37Updated last year
• chrisquince / STRONG
  Strain Resolution ON Graphs
  ☆48Updated 2 years ago
• nextgenusfs / funannotate2
  Eukaryotic genome annotation software.
  ☆20Updated 2 weeks ago