Alternatives and similar repositories for LRBinner

Users that are interested in LRBinner are comparing it to the libraries listed below

• anuradhawick / kmertools
  kmer based feature extraction tool for bioinformatics, metagenomics, AI/ML and more
  ☆45Updated 2 months ago
• anuradhawick / MetaBCC-LR
  Reference-free Binning of Metagenomics Long Reads using Coverage and Composition
  ☆20Updated last year
• KatyBrown / plot_phylo
  Python package to plot a phylogenetic tree on an existing matplotlib axis.
  ☆27Updated 5 months ago
• fpusan / SuperPang
  Non-redundant pangenome assemblies from multiple genomes or bins
  ☆14Updated 8 months ago
• metagentools / MetaCoAG
  🚦🧬 Binning Metagenomic Contigs via Composition, Coverage and Assembly Graphs
  ☆68Updated last year
• bluenote-1577 / floria
  Strain-level haplotyping for metagenomes with short or long-reads.
  ☆63Updated 9 months ago
• FOI-Bioinformatics / nanometa_live
  A streamlined workflow and GUI for real-time species identification and pathogen characterization via nanopore sequencing data. Engineere…
  ☆20Updated last year
• KoslickiLab / YACHT
  A mathematically characterized hypothesis test for organism presence/absence in a metagenome
  ☆34Updated last week
• taxburst / taxburst
  sunburst plots for taxonomy - working to update Krona
  ☆43Updated 3 months ago
• flu-crew / parnas
  Phylogenetic maximum representation sampling: choosing most representative strains or taxa
  ☆40Updated 3 months ago
• rvicedomini / strainberry
  Automated strain separation of low-complexity metagenomes
  ☆52Updated 4 years ago
• bacpop / pp-sketchlib
  Library of sketching functions used by PopPUNK
  ☆31Updated 9 months ago
• mbhall88 / lrge
  Genome size estimation from long read overlaps
  ☆80Updated last month
• CAMI-challenge / AMBER
  AMBER: Assessment of Metagenome BinnERs
  ☆32Updated last week
• at-cg / mm2-plus
  Fast long-read mapper and whole-genome aligner (accelerated version of minimap2)
  ☆36Updated last week
• karel-brinda / Phylign
  Alignment against all pre-2019 bacteria on laptops within a few hours (former MOF-Search)
  ☆39Updated last year
• ZhaoXM-Lab / metaMIC
  Assessing and Improving the quality of metagenomic assemblies
  ☆31Updated 3 years ago
• niemasd / ViralConsensus
  Fast viral consensus genome reconstruction
  ☆25Updated 6 months ago
• LuoGroup2023 / PanTax
  PanTax: Strain-level metagenomic profiling using pangenome graphs
  ☆45Updated 2 weeks ago
• bacpop / mandrake
  Mandrake 🌿/👨‍🔬🦆 – Fast visualisation of the population structure of pathogens using Stochastic Cluster Embedding
  ☆39Updated 10 months ago
• chrisquince / STRONG
  Strain Resolution ON Graphs
  ☆50Updated 2 years ago
• zjshi / Maast
  Microbial agile accurate SNP Typer
  ☆30Updated 2 years ago
• sanger-pathogens / seroba
  k-mer based Pipeline to identify the Serotype from Illumina NGS reads
  ☆26Updated 2 years ago
• phac-nml / refseq_masher
  Mash MinHash search your nucleotide sequences against a NCBI RefSeq genomes database
  ☆43Updated 5 years ago
• Arkadiy-Garber / SprayNPray
  Rapid and simple taxonomic profiling of genome and metagenome contigs
  ☆29Updated 2 years ago
• dib-lab / charcoal
  Remove contaminated contigs from genomes using k-mers and taxonomies.
  ☆59Updated 2 years ago
• treangenlab / Olivar
  Olivar: towards automated variant aware primer design for multiplex tiled amplicon sequencing of pathogens
  ☆36Updated this week
• althonos / pyorthoani
  A Python implementation of the OrthoANI algorithm for nucleotide identity measurement.
  ☆33Updated 5 months ago
• mbhall88 / nohuman
  Remove human reads from a sequencing run
  ☆47Updated last month
• RolandFaure / Hairsplitter
  Software that separates very close sequences that have been collapsed during assembly. Uses only long reads.
  ☆35Updated 8 months ago