LRBinner is a long-read binning tool published in WABI 2021 proceedings and AMB.
☆33Aug 10, 2026Updated 2 months ago
Alternatives and similar repositories for LRBinner
Users that are interested in LRBinner are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Reference-free Binning of Metagenomics Long Reads using Coverage and Composition☆20Sep 4, 2026Updated last month
- ✨🧬 Refined binning of metagenomic contigs using assembly graphs☆97Mar 6, 2025Updated last year
- ☆36Aug 7, 2026Updated 2 months ago
- 🛠️🧬 A Software Framework to Manipulate Assembly Graphs☆22Updated this week
- Tool to estimate genome quality of microbial eukaryotes☆48Aug 14, 2026Updated 2 months ago
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- HyLight is a strain aware de novo assembly method based on the overlap-layout-consensus (OLC) paradigm that leverages the strengths of NG…☆12Sep 18, 2024Updated 2 years ago
- kmer based feature extraction tool for bioinformatics, metagenomics, AI/ML and more☆48Jul 12, 2026Updated 3 months ago
- Set of utilities on sequences and BAM files☆28Oct 27, 2021Updated 4 years ago
- ☆11Nov 17, 2020Updated 5 years ago
- ☯️🧬 Refined and Overlapped Binning of Metagenomic Contigs Using Assembly Graphs☆37Oct 24, 2025Updated 11 months ago
- MAG Circularization Method☆33Nov 4, 2025Updated 11 months ago
- An algorithm for clustering metagenomic sequences.☆43Aug 5, 2026Updated 2 months ago
- plane sweep filtering genome alignments☆24Sep 28, 2026Updated 2 weeks ago
- De novo metagenome assembler☆15Mar 29, 2023Updated 3 years ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- A set of programs for the taxonomic analysis of genetic sequences☆15Jun 12, 2023Updated 3 years ago
- ☆63Sep 15, 2025Updated last year
- Taxonomic classifier for sequencing reads (bulk and single-cell data, short and long read) using FM-index with run-block compressed BWT.☆98Oct 7, 2026Updated last week
- A SIMD-accelerated library to compute random minimizers☆48Oct 2, 2026Updated last week
- Strain-level haplotyping for metagenomes with short or long-reads.☆71Apr 10, 2025Updated last year
- Hybrid error correction approach for long reads using overlap graph☆11Sep 26, 2023Updated 3 years ago
- MetaMDBG: a lightweight assembler for long and accurate metagenomics reads.☆234May 9, 2026Updated 5 months ago
- Automatic eukaryotic taxonomic classification☆33May 9, 2025Updated last year
- 🚦🧬 Binning Metagenomic Contigs via Composition, Coverage and Assembly Graphs☆67Aug 28, 2026Updated last month
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- sunburst plots for taxonomy - working to update Krona☆48Sep 22, 2025Updated last year
- Fast sequence vectorization for metagenomics analysis. Converts input sequences into oligonucleotide frequency vectors, fast!☆14May 12, 2024Updated 2 years ago
- ☆64Feb 27, 2024Updated 2 years ago
- R integration for edlib, a C/C++ library for pairwise sequence alignment using edit distance (Levenshtein distance).☆11Jul 20, 2025Updated last year
- Nanopore UMI-linked consensus sequencing☆18Feb 11, 2021Updated 5 years ago
- GpC methylation from fast5:s to reference anchored calls☆10Nov 18, 2020Updated 5 years ago
- ☆22Jul 2, 2026Updated 3 months ago
- A FASTA/FASTQ format parser library☆20Mar 1, 2024Updated 2 years ago
- Creates a simple OTU table from Kraken2 report.☆13Oct 15, 2024Updated 2 years ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Clustering tool optimized for sparse distance matrices: ~16M elements with ~190M connections clustered in minutes.☆16Sep 12, 2026Updated last month
- ☆24Dec 5, 2018Updated 7 years ago
- ☆17Jan 5, 2021Updated 5 years ago
- Autometa: Automated Extraction of Genomes from Shotgun Metagenomes☆45Jan 24, 2025Updated last year
- More scalable dereplication for metagenome assembled genomes☆89Oct 1, 2026Updated last week
- Parsnp was designed to align the core genome of hundreds to thousands of bacterial genomes within a few minutes to few hours. Input can b…☆158Sep 2, 2026Updated last month
- Strain-level abundances estimation in metagenomic samples using variation graphs☆24Jan 29, 2023Updated 3 years ago