leylabmpi / DeepMAsED

Related projects: ⓘ

• Arcadia-Science / metagenomics
  A Nextflow workflow for QC, evaluation, and profiling of metagenomic samples using short- and long-read technologies
  ☆37Updated last year
• CAMI-challenge / AMBER
  AMBER: Assessment of Metagenome BinnERs
  ☆25Updated 2 weeks ago
• chrisquince / STRONG
  Strain Resolution ON Graphs
  ☆45Updated last year
• CAMI-challenge / OPAL
  OPAL: Open-community Profiling Assessment tooL
  ☆26Updated last month
• leylabmpi / Struo2
  Scalable creating/updating of metagenome profiling databases
  ☆57Updated last year
• marbl / MetaCompass
  MetaCompass: Reference-guided Assembly of Metagenomes
  ☆38Updated 3 years ago
• salzberg-lab / Balrog
  Bacterial Annotation by Learned Representation of Genes
  ☆54Updated 3 years ago
• ZhaoXM-Lab / metaMIC
  Assessing and Improving the quality of metagenomic assemblies
  ☆27Updated 2 years ago
• davidemms / SHOOT
  SHOOT.bio - the phylogenetic search engine
  ☆24Updated last year
• sgearle / bugwas
  Locus and lineage tests for bacterial GWAS
  ☆30Updated 6 years ago
• PedroMTQ / mantis
  A package to annotate protein sequences
  ☆53Updated 2 months ago
• rrwick / Bacsort
  a collection of scripts for organising bacterial genomes by species
  ☆75Updated 2 years ago
• wtmatlock / flanker
  Gene-flank analysis tool
  ☆25Updated 4 months ago
• biocore / wol
  Reference Phylogeny for Bacterial and Archaeal Genomes
  ☆25Updated last year
• nick-youngblut / gtdb_to_taxdump
  Convert GTDB taxonomy to NCBI taxdump format
  ☆65Updated last year
• steineggerlab / conterminator
  Detection of incorrectly labeled sequences across kingdoms
  ☆77Updated last year
• nvelden / geneviewer
  An R package designed for drawing gene arrow maps
  ☆23Updated last week
• ToniWestbrook / paladin
  Protein Alignment and Detection Interface
  ☆60Updated 5 months ago
• KennthShang / PhaMer
  Accurate identification of bacteriophages from metagenomic data using Transformer
  ☆19Updated 7 months ago
• apcamargo / taxopy
  A Python package for obtaining complete lineages and the lowest common ancestor (LCA) from a set of taxonomic identifiers
  ☆38Updated last month
• ablab / viralVerify
  viralVerify: viral contig verification tool
  ☆65Updated 3 years ago
• XiaofangJ / PhaseFinder
  A pipeline to computationally identify invertible DNA regions and quantify their orientations.
  ☆25Updated 8 months ago
• alexmsalmeida / virsearch
  Snakemake workflow to detect and classify viruses in metagenome assemblies.
  ☆18Updated 7 months ago
• dcdanko / MD2
  MicrobeDirectory 2.0
  ☆21Updated 4 years ago
• ctmrbio / stag-mwc
  StaG Metagenomic Workflow Collaboration
  ☆26Updated last month
• BeatsonLab-MicrobialGenomics / micropipe
  A pipeline for high-quality bacterial genome construction using ONT sequencing
  ☆38Updated last year
• lozuponelab / SCNIC
  Sparse Cooccurence Network Investigation for Compositional data
  ☆21Updated 2 weeks ago
• arumugamlab / msamtools
  Metagenomics-related extended functionalities to samtools
  ☆18Updated last year
• takaram / kofam_scan
  CLI tool to annotate genes with KOfam
  ☆69Updated last year
• BigDataBiology / argNorm
  ARG normalization by mapping to the ARO ontology.
  ☆21Updated last week