leylabmpi / DeepMAsEDLinks
Deep learning for Metagenome Assembly Error Detection
☆26Updated 4 years ago
Alternatives and similar repositories for DeepMAsED
Users that are interested in DeepMAsED are comparing it to the libraries listed below
Sorting:
- AMBER: Assessment of Metagenome BinnERs☆30Updated 5 months ago
- Predict prokaryotic host for phage metagenomic sequences☆52Updated 9 months ago
- Follow up to Grace Blackwell's 661k dataset, for 2023☆106Updated this week
- Scalable creating/updating of metagenome profiling databases☆61Updated 2 years ago
- Metagenomics-related extended functionalities to samtools☆21Updated last year
- From genomes to phenotypes: Traitar, the microbial trait analyzer☆59Updated 5 years ago
- viralVerify: viral contig verification tool☆69Updated 3 years ago
- A toolkit for prokaryotic comparative genomics☆49Updated 5 months ago
- Strain Resolution ON Graphs☆48Updated last year
- Fast k-mer based tool for multi locus sequence typing (MLST)☆44Updated 4 years ago
- a collection of scripts for organising bacterial genomes by species☆76Updated 3 years ago
- Woltka: a versatile meta'omic data classifier☆74Updated 3 months ago
- A package to annotate protein sequences☆58Updated 4 months ago
- Microbiome classification pipeline☆66Updated last month
- scripts for estimating bacteria replication rates based on population genome copy number variation☆72Updated 5 years ago
- CLI tool to annotate genes with KOfam☆80Updated 2 years ago
- Snakemake pipeline calculating KEGG orthologue abundance in metagenomic sequence data.☆24Updated 8 months ago
- ☆41Updated 4 years ago
- OPAL: Open-community Profiling Assessment tooL☆28Updated 5 months ago
- Detection of incorrectly labeled sequences across kingdoms☆86Updated 2 years ago
- A tool for generating bacterial genomes from metagenomes with nanopore long read sequencing☆70Updated 3 years ago
- Assembling the cause of phenotypes and genotypes from NGS data☆29Updated 5 years ago
- A pipeline to computationally identify invertible DNA regions and quantify their orientations.☆29Updated last year
- ☆45Updated 2 years ago
- PlasmidID is a mapping-based, assembly-assisted plasmid identification tool that analyzes and gives graphic solution for plasmid identifi…☆41Updated 3 years ago
- GTDB taxonomy taxdump files with trackable TaxIds☆54Updated last month
- zol (& fai): large-scale targeted detection and evolutionary investigation of gene clusters (i.e. BGCs, phages, etc.)☆59Updated last week
- Split Kmer Analysis☆65Updated 3 years ago
- Linking MAGs with 16S rRNA marker genes☆24Updated 4 months ago
- Improvement of metagenome-assembled genomes☆53Updated 5 years ago