leylabmpi / DeepMAsEDLinks
Deep learning for Metagenome Assembly Error Detection
☆25Updated 5 years ago
Alternatives and similar repositories for DeepMAsED
Users that are interested in DeepMAsED are comparing it to the libraries listed below
Sorting:
- AMBER: Assessment of Metagenome BinnERs☆32Updated 11 months ago
- Bacterial Annotation by Learned Representation of Genes☆58Updated 4 years ago
- PaperBLAST: find papers about a protein or its homologs☆49Updated 2 weeks ago
- Strain Resolution ON Graphs☆49Updated 2 years ago
- A Reference Pathways Mapper for turning metagenomic functional profiles into pathway/module profiles.☆27Updated 7 years ago
- A package to annotate protein sequences☆60Updated 10 months ago
- Detection of incorrectly labeled sequences across kingdoms☆87Updated 3 years ago
- ARTIC SARS-CoV-2 workflow and reporting☆50Updated 8 months ago
- Protein Alignment and Detection Interface☆60Updated last year
- Workflow to rapidly quantify taxa from all domains of life, directly from short-read human gut metagenomes☆70Updated 3 weeks ago
- Pipeline for major biological analyses.☆36Updated 3 years ago
- Woltka: a versatile meta'omic data classifier☆75Updated 3 months ago
- MetaCompass: Reference-guided Assembly of Metagenomes☆41Updated 4 months ago
- de novo virus assembler of Illumina paired reads☆58Updated 4 years ago
- ☆45Updated 2 years ago
- Convert GTDB taxonomy to NCBI taxdump format☆72Updated 2 years ago
- OPAL: Open-community Profiling Assessment tooL☆30Updated 11 months ago
- Scalable creating/updating of metagenome profiling databases☆63Updated 6 months ago
- Fast and accurate tool for calculating Average Nucleotide Identity (ANI) and clustering virus genomes and metagenomes☆95Updated 7 months ago
- DeepMicrobes: taxonomic classification for metagenomics with deep learning☆103Updated 3 years ago
- CLI tool to annotate genes with KOfam☆87Updated 2 years ago
- Microbiome classification pipeline☆65Updated 7 months ago
- Simple bacterial assembly and annotation pipeline☆80Updated last month
- A Python package for obtaining complete lineages and the lowest common ancestor (LCA) from a set of taxonomic identifiers☆52Updated last month
- viralVerify: viral contig verification tool☆72Updated 4 years ago
- Visualization of the pan-genome output by panX☆65Updated 6 months ago
- ☆42Updated 6 months ago
- A metagenomic strategy for harnessing the chemical repertoire of the human microbiome☆33Updated last month
- From genomes to phenotypes: Traitar, the microbial trait analyzer☆64Updated 6 years ago
- A toolkit for prokaryotic comparative genomics☆51Updated 2 months ago