leylabmpi / DeepMAsEDLinks
Deep learning for Metagenome Assembly Error Detection
☆25Updated 5 years ago
Alternatives and similar repositories for DeepMAsED
Users that are interested in DeepMAsED are comparing it to the libraries listed below
Sorting:
- AMBER: Assessment of Metagenome BinnERs☆32Updated last week
- Strain Resolution ON Graphs☆50Updated 2 years ago
- PGPg Finder is a command-line tool that offers different workflows for genome and metagenome annotation of Plant-Growth Promotion Genes. …☆27Updated 2 weeks ago
- viralVerify: viral contig verification tool☆73Updated 4 years ago
- Woltka: a versatile meta'omic data classifier☆76Updated 4 months ago
- ☆42Updated 7 months ago
- Convert GTDB taxonomy to NCBI taxdump format☆73Updated 2 years ago
- PaperBLAST: find papers about a protein or its homologs☆50Updated last month
- A Reference Pathways Mapper for turning metagenomic functional profiles into pathway/module profiles.☆27Updated 7 years ago
- Database of genomes integrated from the gut microbiome and other environments☆45Updated 2 years ago
- Course materials for the Genomics Aotearoa Metagenomics Summer School, to be hosted at the University of Auckland in Septermber☆66Updated last year
- From genomes to phenotypes: Traitar, the microbial trait analyzer☆64Updated 6 years ago
- Microbiome classification pipeline☆65Updated 8 months ago
- Improvement of metagenome-assembled genomes☆54Updated 5 years ago
- Workflow to rapidly quantify taxa from all domains of life, directly from short-read human gut metagenomes☆71Updated last month
- OPAL: Open-community Profiling Assessment tooL☆30Updated last week
- Pipeline for major biological analyses.☆36Updated 3 years ago
- Scalable creating/updating of metagenome profiling databases☆63Updated 6 months ago
- ☆29Updated last year
- Computational workflows for metagenomics tasks, by the Bhatt lab☆47Updated 2 years ago
- A package to annotate protein sequences☆60Updated 10 months ago
- A fast and scalable phylogenetic tree viewer for microbiome data analysis☆55Updated last year
- MetaCompass: Reference-guided Assembly of Metagenomes☆43Updated 5 months ago
- Unified Human Gut Virome Catalog☆40Updated 2 months ago
- ARTIC SARS-CoV-2 workflow and reporting☆50Updated 8 months ago
- Metaphor: a general-purpose workflow for assembly and binning of metagenomes☆40Updated 2 months ago
- Follow up to Grace Blackwell's 661k dataset, for 2023☆128Updated 4 months ago
- Assessing and Improving the quality of metagenomic assemblies☆31Updated 3 years ago
- Bacterial Annotation by Learned Representation of Genes☆58Updated 4 years ago
- A pipeline for the macro- and micro-diversity analyses and visualization of metagenomic-derived populations☆44Updated 2 years ago