EBI-Metagenomics / emg-toolkitLinks
MGnify API toolkit
☆20Updated 4 months ago
Alternatives and similar repositories for emg-toolkit
Users that are interested in emg-toolkit are comparing it to the libraries listed below
Sorting:
- BinaRena: Interactive Visualization and Binning of Metagenomic Contigs☆32Updated 9 months ago
- Comparison pipeline for Prokaryote Protein Coding Gene Predictors☆23Updated this week
- Cython bindings and Python interface to FastANI, a method for fast whole-genome similarity estimation.☆22Updated last month
- Toolkit for establishing, updating, and validating GTDB species clusters☆21Updated last month
- Strain-level abundances estimation in metagenomic samples using variation graphs☆25Updated 2 years ago
- MAG Circularization Method☆33Updated 3 years ago
- Strain Resolution ON Graphs☆47Updated last year
- Phasing for metagenomics using PacBio long reads☆17Updated 3 years ago
- PyO3 bindings and Python interface to skani, a method for fast genomic identity calculation using sparse chaining.☆27Updated 3 weeks ago
- ☆21Updated 4 months ago
- SMBGC Annotation using Neural Networks Trained on Interpro Signatures☆27Updated last month
- Rapid discovery of novel prophages using biological feature engineering and machine learning☆37Updated 5 months ago
- ☆17Updated 3 years ago
- ☆31Updated 3 years ago
- ☆43Updated last year
- SpydrPick: mutual information based detection of pairs of genomic loci co-evolving under a shared selective pressure.☆13Updated 3 years ago
- Phylogenetic compression of extremely large genome collections [661k ↘𝟭𝟲𝗚𝗶𝗕 | BIGSIdata ↘𝟰𝟴𝗚𝗶𝗕 | AllTheBact'23 ↘𝟳𝟱𝗚𝗶𝗕]☆33Updated 2 months ago
- Microbial agile accurate SNP Typer☆29Updated last year
- BiG-MEx implementation as Docker images and R packages☆13Updated 3 years ago
- Convert genbank files to a swath of other formats☆18Updated last year
- GRIMER performs analysis of microbiome studies and generates a portable and interactive dashboard integrating annotation, taxonomy and me…☆23Updated 2 years ago
- Binnacle: Using Scaffolds to Improve the Contiguity and Quality of Metagenomic Bins☆13Updated 3 years ago
- Mandrake 🌿/👨🔬🦆 – Fast visualisation of the population structure of pathogens using Stochastic Cluster Embedding☆38Updated 3 months ago
- ViromeQC is a computational tool to benchmark and quantify non-viral contamination in VLP-enrihed viromes. ViromeQC provides an enrichmen…☆19Updated 2 years ago
- Repository for codes, analyses and visualizations for the CAMI II challenges☆12Updated last year
- Core ELEment Bias Removal In Metagenome Binned ORthologs: A pipeline to make pangenomes from MAGs☆24Updated 10 months ago
- Rapid and simple taxonomic profiling of genome and metagenome contigs☆28Updated last year
- Non-redundant pangenome assemblies from multiple genomes or bins☆13Updated 3 weeks ago
- ☆45Updated last year
- strain-level analysis tools☆37Updated 7 months ago