statbiophys / soNNiaLinks
☆15Updated last week
Alternatives and similar repositories for soNNia
Users that are interested in soNNia are comparing it to the libraries listed below
Sorting:
- Code and data used in The Great Repertoire Project☆30Updated 3 years ago
- Collection of papers related to BCR repertoire analyses☆18Updated 3 years ago
- TCRconv is a deep learning model for predicting recognition between T cell receptors and epitopes. It uses protBERT embeddings for the TC…☆25Updated 2 years ago
- HLA-II ligand predictor.☆43Updated 2 years ago
- STAPLER (Shared TCR And Peptide Language bidirectional Encoder Representations from transformers) is a language model that uses a joint T…☆26Updated last month
- ☆38Updated last year
- accurate prediction of promoter activity and variant effects from massive parallel reporter assays☆36Updated last month
- 📝 [Paper] TCRen: predicting TCR-peptide recognition based on residue-level pairwise statistical potential☆18Updated 2 months ago
- ERGO-II, an updated version of ERGO including more features for TCR-peptide binding prediction☆32Updated 3 years ago
- Infer selection pressures on features of amino acid CDR3 sequences.☆25Updated last year
- An error model and pipeline for analyzing deep mutational scanning (DMS) data and diagnosing common experimental pathologies☆32Updated last month
- Generic TCR-epitope recognition prediction using CNN approach on both known and novel epitopes☆16Updated 2 years ago
- ☆28Updated 4 months ago
- Code for "T Cell Receptor Specificity Prediction with Bimodal Attention Networks" (https://doi.org/10.1093/bioinformatics/btab294, ISMB 2…☆29Updated last year
- ☆19Updated 2 years ago
- python tools for TCR:peptide-MHC modeling and analysis☆75Updated last year
- flexible CDR based distance metrics☆62Updated 9 months ago
- Predictor of TCR-epitope interactions☆26Updated 4 months ago
- Absolve antibody variable domain sequence analysis☆16Updated 6 years ago
- Pytorch implementation of the Borzoi model from Calico, and Flashzoi, a 3x faster Borzoi enhancement.☆56Updated 2 weeks ago
- Large language modeling applied to T-cell receptor (TCR) sequences.☆53Updated 3 years ago
- Compute generation probabilities of CDR3 amino acid and nucleotide sequences☆53Updated 3 years ago
- ☆40Updated 4 years ago
- Decoding the functional networks of non-model organisms☆11Updated 2 weeks ago
- Comparing performance across many methodological dimensions among tools that predict RNA after TF knockdowns and overexpression.☆19Updated 2 months ago
- NetTCR-2.0. Sequence-based prediction of peptide-TCR binding☆34Updated 3 years ago
- ☆74Updated last year
- BigMHC predicts MHC-I (neo)epitope presentation and immunogenicity☆53Updated last year
- code to run EPInformer for gene expression prediction and gene-enhancer links prioritization☆43Updated 6 months ago
- HLA-I ligand predictor☆39Updated 5 months ago