☆18Nov 18, 2025Updated 4 months ago
Alternatives and similar repositories for soNNia
Users that are interested in soNNia are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Infer selection pressures on features of amino acid CDR3 sequences.☆25Apr 17, 2024Updated last year
- Altered TCR Ligand Affinities and Structures☆12Dec 1, 2023Updated 2 years ago
- Compute generation probabilities of CDR3 amino acid and nucleotide sequences☆65Nov 18, 2025Updated 4 months ago
- Summary statistics for repertoires☆17Feb 1, 2023Updated 3 years ago
- STAPLER (Shared TCR And Peptide Language bidirectional Encoder Representations from transformers) is a language model that uses a joint T…☆28Apr 22, 2025Updated 11 months ago
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- ☆15Nov 13, 2023Updated 2 years ago
- python tools for TCR:peptide-MHC modeling and analysis☆91Apr 12, 2024Updated 2 years ago
- Code and data used in The Great Repertoire Project☆29Jun 14, 2021Updated 4 years ago
- IGoR is a C++ software designed to infer V(D)J recombination related processes from sequencing data. Find full documentation at:☆52Jan 7, 2026Updated 3 months ago
- B- and T-cell receptor sequence annotation, simulation, clonal family and germline inference, and affinity prediction☆62Apr 4, 2026Updated last week
- A database of T-cell receptor sequences☆11Aug 6, 2025Updated 8 months ago
- TCRGP, a novel Gaussian process method that can predict if TCRs recognize certain epitopes. This method can utilize different CDR sequenc…☆30Jan 31, 2023Updated 3 years ago
- ☆22Oct 4, 2022Updated 3 years ago
- Using BCR and expression for sequence embedding☆26Apr 3, 2026Updated last week
- DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- Trans-association between HLA and TCR-CDR3☆19Mar 29, 2023Updated 3 years ago
- Invariant Representation learning☆20Jun 26, 2024Updated last year
- Python library for immune repertoire analysis☆17Feb 27, 2026Updated last month
- Code for "T Cell Receptor Specificity Prediction with Bimodal Attention Networks" (https://doi.org/10.1093/bioinformatics/btab294, ISMB 2…☆30Jul 12, 2025Updated 9 months ago
- OpenChord is a Python library for creating chord diagrams.☆11Feb 4, 2025Updated last year
- TABR-BERT: an Accurate and Robust BERT-based Transfer Learning Model for TCR-pMHC Interaction Prediction☆12Jul 19, 2024Updated last year
- p-IgGen: A Generative Paired Antibody Language Model☆13May 6, 2025Updated 11 months ago
- Analysis code for the TAP-seq manuscript.☆11Jun 25, 2021Updated 4 years ago
- Meta-analysis of drug target evidence in single-cell data☆16Oct 22, 2024Updated last year
- DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- Identification of viral RdRPs in single-cell RNA sequencing data☆13Mar 12, 2026Updated last month
- Repository for custom module scripts for SMIDA☆13May 19, 2025Updated 10 months ago
- Single-cell immune repertoire trajectory analysis in R☆12Aug 8, 2025Updated 8 months ago
- Simulation and inference of gene regulatory networks based on transcriptional bursting☆13Oct 26, 2025Updated 5 months ago
- Software tools for the analysis of epitope-specific T cell receptor (TCR) repertoires (scroll down for the README)☆87Oct 6, 2021Updated 4 years ago
- Trying to train LoRAs for ESM-2☆12Aug 6, 2023Updated 2 years ago
- Sequence-based protein solubility prediction using multidimensional embedding☆13Apr 19, 2021Updated 4 years ago
- Scripts for reproducing analyses of large RNA-seq datasets☆15May 22, 2019Updated 6 years ago
- Predictor of TCR-epitope interactions☆34Sep 9, 2025Updated 7 months ago
- Proton VPN Special Offer - Get 70% off • AdSpecial partner offer. Trusted by over 100 million users worldwide. Tested, Approved and Recommended by Experts.
- An R package for correcting p-values for multiple hypothesis testing in comparative quantitative omics experiments using permutation-base…☆12Mar 11, 2026Updated last month
- 📝 [Tutorial] RepSeq data mining basics in R☆11Mar 13, 2019Updated 7 years ago
- IMSEQ - IMmunogenetic SEQuence Analysis☆15Aug 10, 2018Updated 7 years ago
- Size-Wise Analysis of Transfer Learning of pLM Embeddings☆12Jun 10, 2025Updated 10 months ago
- Simple Audio Embedding Toolkit☆12Aug 9, 2025Updated 8 months ago
- ☆48Mar 30, 2026Updated last week
- the analysis script for PrismNet☆10May 17, 2020Updated 5 years ago