☆19Nov 18, 2025Updated 8 months ago
Alternatives and similar repositories for soNNia
Users that are interested in soNNia are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Altered TCR Ligand Affinities and Structures☆13Dec 1, 2023Updated 2 years ago
- Compute generation probabilities of CDR3 amino acid and nucleotide sequences☆68Nov 18, 2025Updated 8 months ago
- Summary statistics for repertoires☆17Feb 1, 2023Updated 3 years ago
- STAPLER (Shared TCR And Peptide Language bidirectional Encoder Representations from transformers) is a language model that uses a joint T…☆29Apr 22, 2025Updated last year
- ☆15Nov 13, 2023Updated 2 years ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- python tools for TCR:peptide-MHC modeling and analysis☆97Jun 26, 2026Updated last month
- IGoR is a C++ software designed to infer V(D)J recombination related processes from sequencing data. Find full documentation at:☆54Jan 7, 2026Updated 7 months ago
- A database of T-cell receptor sequences☆11Aug 6, 2025Updated last year
- Code and data used in The Great Repertoire Project☆29Jun 14, 2021Updated 5 years ago
- B- and T-cell receptor sequence annotation, simulation, clonal family and germline inference, and affinity prediction☆64Updated this week
- TCRGP, a novel Gaussian process method that can predict if TCRs recognize certain epitopes. This method can utilize different CDR sequenc…☆30Jan 31, 2023Updated 3 years ago
- ☆19Jun 11, 2026Updated 2 months ago
- ☆22Oct 4, 2022Updated 3 years ago
- Using BCR and expression for sequence embedding☆27Jun 12, 2026Updated 2 months ago
- Proton VPN Special Offer - Get 70% off • AdSpecial partner offer. Trusted by over 100 million users worldwide. Tested, Approved and Recommended by Experts.
- Trans-association between HLA and TCR-CDR3☆19Mar 29, 2023Updated 3 years ago
- Invariant Representation learning☆20Jun 26, 2024Updated 2 years ago
- Python library for immune repertoire analysis☆17Updated this week
- Code for "T Cell Receptor Specificity Prediction with Bimodal Attention Networks" (https://doi.org/10.1093/bioinformatics/btab294, ISMB 2…☆31Jul 12, 2025Updated last year
- OpenChord is a Python library for creating chord diagrams.☆11Feb 4, 2025Updated last year
- Graph Learning of INTER-protein contacts☆10Feb 20, 2022Updated 4 years ago
- TABR-BERT: an Accurate and Robust BERT-based Transfer Learning Model for TCR-pMHC Interaction Prediction☆12Jul 19, 2024Updated 2 years ago
- 📝 [Tutorial] RepSeq data mining basics in R☆11Mar 13, 2019Updated 7 years ago
- Identification of viral RdRPs in single-cell RNA sequencing data☆14Mar 12, 2026Updated 5 months ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Repository for custom module scripts for SMIDA☆13May 19, 2025Updated last year
- Analysis code for the TAP-seq manuscript.☆11Jun 25, 2021Updated 5 years ago
- Single-cell immune repertoire trajectory analysis in R☆12Aug 8, 2025Updated last year
- Meta-analysis of drug target evidence in single-cell data☆17Oct 22, 2024Updated last year
- p-IgGen: A Generative Paired Antibody Language Model☆13May 6, 2025Updated last year
- Simulation and inference of gene regulatory networks based on transcriptional bursting☆13Apr 17, 2026Updated 3 months ago
- Software tools for the analysis of epitope-specific T cell receptor (TCR) repertoires (scroll down for the README)☆87Oct 6, 2021Updated 4 years ago
- Trying to train LoRAs for ESM-2☆13Aug 6, 2023Updated 3 years ago
- Predictor of TCR-epitope interactions☆38Sep 9, 2025Updated 11 months ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Scripts for reproducing analyses of large RNA-seq datasets☆15May 22, 2019Updated 7 years ago
- PREQUAL: a pre-alignment quality filter for comparative sequence analyses☆34Jun 1, 2022Updated 4 years ago
- ☆11Oct 25, 2022Updated 3 years ago
- An R package for correcting p-values for multiple hypothesis testing in comparative quantitative omics experiments using permutation-base…☆13Mar 11, 2026Updated 5 months ago
- IMSEQ - IMmunogenetic SEQuence Analysis☆15Aug 10, 2018Updated 8 years ago
- ☆15Oct 28, 2020Updated 5 years ago
- Simple Audio Embedding Toolkit☆12Aug 9, 2025Updated last year