TCRGP, a novel Gaussian process method that can predict if TCRs recognize certain epitopes. This method can utilize different CDR sequences from both TCRα and TCRβ chains from single-cell data and learn which CDRs are important in recognizing the different epitopes.
☆30Jan 31, 2023Updated 3 years ago
Alternatives and similar repositories for TCRGP
Users that are interested in TCRGP are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- NetTCR-2.0. Sequence-based prediction of peptide-TCR binding☆37Mar 29, 2022Updated 4 years ago
- flexible CDR based distance metrics☆75Dec 16, 2025Updated 7 months ago
- 📝 [Paper/Tutorial] T-cell repertoire annotation and motif discovery☆14Sep 15, 2025Updated 10 months ago
- Software tools for the analysis of epitope-specific T cell receptor (TCR) repertoires (scroll down for the README)☆87Oct 6, 2021Updated 4 years ago
- Detecting TCR involved in immune responses from single RepSeq datasets☆28Jun 17, 2019Updated 7 years ago
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- ☆14Mar 18, 2022Updated 4 years ago
- Generic TCR-epitope recognition prediction using CNN approach on both known and novel epitopes☆17May 22, 2023Updated 3 years ago
- Altered TCR Ligand Affinities and Structures☆13Dec 1, 2023Updated 2 years ago
- python tools for TCR:peptide-MHC modeling and analysis☆97Jun 26, 2026Updated last month
- Using BCR and expression for sequence embedding☆27Jun 12, 2026Updated 2 months ago
- ☆17Jun 24, 2021Updated 5 years ago
- ☆19Apr 20, 2025Updated last year
- immuneML is a platform for machine learning analysis of adaptive immune receptor repertoire data.☆76Aug 7, 2026Updated last week
- ☆31Jun 24, 2025Updated last year
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- TCRconv is a deep learning model for predicting recognition between T cell receptors and epitopes. It uses protBERT embeddings for the TC…☆27Oct 18, 2022Updated 3 years ago
- Code for "T Cell Receptor Specificity Prediction with Bimodal Attention Networks" (https://doi.org/10.1093/bioinformatics/btab294, ISMB 2…☆31Jul 12, 2025Updated last year
- A unified cross-attention model for predicting antigen binding specificity to both HLA and TCR molecules☆15May 29, 2026Updated 2 months ago
- Predicting TCR:pMHC binding from structural data☆27Updated this week
- Using TCR and expression for sequence embedding☆63Jan 6, 2026Updated 7 months ago
- A pipeline for complete and accurate recovery of TCR repertoires from high throughput sequencing data.☆23Sep 10, 2023Updated 2 years ago
- ☆19Jun 11, 2026Updated 2 months ago
- ☆41Aug 18, 2020Updated 5 years ago
- ☆19Nov 18, 2025Updated 8 months ago
- GPUs on demand by Runpod - Special Offer Available • AdRun AI, ML, and HPC workloads on powerful cloud GPUs—without limits or wasted spend. Deploy GPUs in under a minute and pay by the second.
- predicting peptide and TCR interaction☆19Jan 27, 2021Updated 5 years ago
- STAPLER (Shared TCR And Peptide Language bidirectional Encoder Representations from transformers) is a language model that uses a joint T…☆29Apr 22, 2025Updated last year
- Predicting T Cell Receptor Specificity with Deep Learning☆10Jul 17, 2019Updated 7 years ago
- Visualize clonal expansion via circle-packing. 'APackOfTheClones' extends 'scRepertoire' to produce a publication-ready visualization of …☆21Aug 28, 2025Updated 11 months ago
- ☆15Jul 16, 2026Updated 3 weeks ago
- 📚 Tools and databases for analyzing HLA and VDJ genes.☆243Feb 12, 2026Updated 6 months ago
- Tools for Unmixing Spectral Flow Cytometry Data☆41Aug 4, 2026Updated last week
- ERGO is a deep learing based model for predicting TCR-peptide binding.☆18Aug 26, 2020Updated 5 years ago
- Convert TCR gene names☆15Dec 26, 2025Updated 7 months ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Deep Learning Methods for Parsing T-Cell Receptor Sequencing (TCRSeq) Data☆122Sep 16, 2025Updated 10 months ago
- ConsensusCruncher is a tool that suppresses errors in next-generation sequencing data by using unique molecular identifiers (UMIs) to ama…☆20Sep 28, 2022Updated 3 years ago
- Git-based antigen specificity database storage & management.☆155Jun 11, 2026Updated 2 months ago
- ERGO-II, an updated version of ERGO including more features for TCR-peptide binding prediction☆36Apr 1, 2022Updated 4 years ago
- ☆13May 15, 2024Updated 2 years ago
- ☆11Oct 25, 2022Updated 3 years ago
- IMSEQ - IMmunogenetic SEQuence Analysis☆15Aug 10, 2018Updated 8 years ago