TCRGP, a novel Gaussian process method that can predict if TCRs recognize certain epitopes. This method can utilize different CDR sequences from both TCRα and TCRβ chains from single-cell data and learn which CDRs are important in recognizing the different epitopes.
☆30Jan 31, 2023Updated 3 years ago
Alternatives and similar repositories for TCRGP
Users that are interested in TCRGP are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- flexible CDR based distance metrics☆74Dec 16, 2025Updated 7 months ago
- 📝 [Paper/Tutorial] T-cell repertoire annotation and motif discovery☆14Sep 15, 2025Updated 10 months ago
- Software tools for the analysis of epitope-specific T cell receptor (TCR) repertoires (scroll down for the README)☆87Oct 6, 2021Updated 4 years ago
- Detecting TCR involved in immune responses from single RepSeq datasets☆28Jun 17, 2019Updated 7 years ago
- ☆14Mar 18, 2022Updated 4 years ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- Generic TCR-epitope recognition prediction using CNN approach on both known and novel epitopes☆17May 22, 2023Updated 3 years ago
- Altered TCR Ligand Affinities and Structures☆12Dec 1, 2023Updated 2 years ago
- python tools for TCR:peptide-MHC modeling and analysis☆97Jun 26, 2026Updated 3 weeks ago
- Using BCR and expression for sequence embedding☆27Jun 12, 2026Updated last month
- ☆17Jun 24, 2021Updated 5 years ago
- ☆19Apr 20, 2025Updated last year
- immuneML is a platform for machine learning analysis of adaptive immune receptor repertoire data.☆76Jul 17, 2026Updated last week
- ☆31Jun 24, 2025Updated last year
- TCRconv is a deep learning model for predicting recognition between T cell receptors and epitopes. It uses protBERT embeddings for the TC…☆27Oct 18, 2022Updated 3 years ago
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- Code for "T Cell Receptor Specificity Prediction with Bimodal Attention Networks" (https://doi.org/10.1093/bioinformatics/btab294, ISMB 2 …☆31Jul 12, 2025Updated last year
- A unified cross-attention model for predicting antigen binding specificity to both HLA and TCR molecules☆15May 29, 2026Updated last month
- Predicting TCR:pMHC binding from structural data☆27Updated this week
- Using TCR and expression for sequence embedding☆63Jan 6, 2026Updated 6 months ago
- A pipeline for complete and accurate recovery of TCR repertoires from high throughput sequencing data.☆23Sep 10, 2023Updated 2 years ago
- ☆19Jun 11, 2026Updated last month
- ☆41Aug 18, 2020Updated 5 years ago
- ☆18Nov 18, 2025Updated 8 months ago
- predicting peptide and TCR interaction☆20Jan 27, 2021Updated 5 years ago
- Proton VPN Special Offer - Get 70% off • AdSpecial partner offer. Trusted by over 100 million users worldwide. Tested, Approved and Recommended by Experts.
- STAPLER (Shared TCR And Peptide Language bidirectional Encoder Representations from transformers) is a language model that uses a joint T…☆29Apr 22, 2025Updated last year
- Predicting T Cell Receptor Specificity with Deep Learning☆10Jul 17, 2019Updated 7 years ago
- Visualize clonal expansion via circle-packing. 'APackOfTheClones' extends 'scRepertoire' to produce a publication-ready visualization of …☆21Aug 28, 2025Updated 10 months ago
- ☆15Jul 16, 2026Updated last week
- 📚 Tools and databases for analyzing HLA and VDJ genes.☆242Feb 12, 2026Updated 5 months ago
- Tools for Unmixing Spectral Flow Cytometry Data☆40Updated this week
- ERGO is a deep learing based model for predicting TCR-peptide binding.☆18Aug 26, 2020Updated 5 years ago
- Convert TCR gene names☆15Dec 26, 2025Updated 6 months ago
- Deep Learning Methods for Parsing T-Cell Receptor Sequencing (TCRSeq) Data☆122Sep 16, 2025Updated 10 months ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- ConsensusCruncher is a tool that suppresses errors in next-generation sequencing data by using unique molecular identifiers (UMIs) to ama…☆21Sep 28, 2022Updated 3 years ago
- Git-based antigen specificity database storage & management.☆155Jun 11, 2026Updated last month
- ERGO-II, an updated version of ERGO including more features for TCR-peptide binding prediction☆36Apr 1, 2022Updated 4 years ago
- ☆14May 15, 2024Updated 2 years ago
- ☆11Oct 25, 2022Updated 3 years ago
- IMSEQ - IMmunogenetic SEQuence Analysis☆15Aug 10, 2018Updated 7 years ago
- T/B cell receptor sequencing analysis notes☆280Dec 1, 2024Updated last year