ccf-tfehlmann / ibdplexus
This package helps wrangle the clinical data in IBD Plexus. IBD Plexus is a data exchange platform designed to accelerate research toward finding cures for Inflammatory Bowel Disease (IBD). To learn more please see https://www.crohnscolitisfoundation.org/research/current-research-initiatives/ibd-plexus.
☆12Updated 3 months ago
Related projects ⓘ
Alternatives and complementary repositories for ibdplexus
- ☆47Updated this week
- Cellxgene Gateway allows you to use the Cellxgene Server provided by the Chan Zuckerberg Institute (https://github.com/chanzuckerberg/cel…☆56Updated 8 months ago
- Fast Gene Set Enrichment Analysis (GSEA) implementation of the prerank algorithm. Use Loess interpolation of bimodal ES distribution for …☆40Updated 3 months ago
- Interactive tutorials for using scikit-bio in biological research☆18Updated 4 months ago
- bioinformatics plotting and tools☆53Updated 5 months ago
- ☆38Updated last month
- coding exercise using TCGA immune infiltration data☆43Updated 9 months ago
- machine-readable file format for genomic library sequence and structure☆114Updated 2 weeks ago
- Shiny app for making and annotating Volcano plots☆21Updated 3 months ago
- Example genomics data for tool developers☆94Updated 4 months ago
- A simple pythonic interface to biomart.☆55Updated 4 years ago
- Explore and download data from the recount3 project☆31Updated 6 months ago
- Functional Associations using Variational Autoencoders☆38Updated last week
- Utilizing single-cell omics from patients tumor to predict response and resistance.☆62Updated last year
- ARCHS4 RNA-seq processing scripts and web server pages.☆54Updated 3 years ago
- Documentation and tutorials on using GCP for biomedical research☆20Updated this week
- ☆63Updated last week
- The analysis repository for the Open Pediatric Brain Tumor Atlas Project☆101Updated last year
- This is a tutorial to guide the analysis of RNAseq dataset using footprint based tools such as DOROTHEA, PROGENY and CARNIVAL☆55Updated last year
- JARVIS: a comprehensive deep learning framework to prioritise non-coding variants in whole genomes☆22Updated 3 weeks ago
- ☆40Updated 3 weeks ago
- Signac☆23Updated last year
- GREIN : GEO RNA-seq Experiments Interactive Navigator☆48Updated 5 years ago
- Pandas-based Data Handler for VCF, BED, and SAM Files☆32Updated 3 years ago
- ☆31Updated last month
- published papers with a lot of data☆62Updated 2 weeks ago
- ☆16Updated 4 months ago
- My youtube programming scripts☆38Updated last month
- Repository of Nextflow+BioContainers workflows☆14Updated 3 years ago