BennyStrobes / surgeLinks
☆12Updated last year
Alternatives and similar repositories for surge
Users that are interested in surge are comparing it to the libraries listed below
Sorting:
- R package for gene selection using k-NN graphs.☆13Updated 2 years ago
- Pairwise Hierarchical Model☆20Updated 3 years ago
- Snakefile-based process to turn 1.4 million ocular cells into a unified meta-atlas☆26Updated last year
- ☆21Updated 3 years ago
- Population-scale single-cell RNA-seq profiling across dopaminergic neuron differentiation☆22Updated last year
- CellRegMap: A statistical framework for mapping context-specific regulatory variants using scRNA-seq☆22Updated last year
- ☆29Updated 2 years ago
- This repository contains HCA Benchmarking codes☆26Updated 6 years ago
- Bead-based single-cell atac processing☆33Updated 4 years ago
- Flexible, probablistic metrics for quality control of scRNA-seq data☆21Updated 2 years ago
- Algorithms for single-cell analysis☆29Updated 4 years ago
- Method for identifying trait-relevant gene annotations from GWAS summary statistics.☆18Updated 3 years ago
- Gene Expression Decomposition and Integration☆19Updated 9 months ago
- Single-cell RNA-sequencing of differentiating iPS cells reveals dynamic genetic effects on gene expression☆15Updated last year
- epigenome analysis to rank transcription factors☆14Updated 5 years ago
- R vignettes for processing BUS format single-cell RNA-seq files☆21Updated 5 years ago
- A re-analysis of the [Single-cell transcriptomic analysis of Alzheimer’s disease](https://www.nature.com/articles/s41586-019-1195-2) usin…☆14Updated last year
- ☆20Updated 3 months ago
- Probabilistic gene expression barcodes for cell type annotation☆25Updated 3 years ago
- Cell type specific enrichments using finemapped variants and quantitative epigenetic data☆47Updated 2 years ago
- scover☆24Updated 2 years ago
- A clusterability measure for scRNA-seq data.☆18Updated 3 years ago
- ☆21Updated 2 years ago
- Custom codes accompanying single cell spatial transcriptomic study on the healthy human lung☆12Updated last year
- Gene Set + S2G strategy annotations analyzed for disease architecture☆56Updated 3 years ago
- ☆28Updated 2 years ago
- Nuclear fraction QC metric to detect empty droplets and damaged cells in scRNA-seq data☆39Updated 4 years ago
- Individual level Differential Expression Analysis for Single cells☆26Updated 2 years ago
- scVI extension for unspliced RNA☆16Updated 6 months ago
- Matrix factorization model for interpreting single cell gene expression in biologically heterogeneous data☆22Updated last year