☆22Sep 20, 2022Updated 3 years ago
Alternatives and similar repositories for DeepCCI
Users that are interested in DeepCCI are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Knowledge-graph-based cell-cell communication inference for spatially resolved transcriptomic data☆75Jan 17, 2025Updated last year
- Evaluation of cell-cell interaction methods by integrating single-cell RNA sequencing data with spatial information☆23Sep 30, 2022Updated 3 years ago
- ☆20Jan 16, 2026Updated 2 months ago
- ☆19Dec 1, 2021Updated 4 years ago
- ☆13Sep 29, 2023Updated 2 years ago
- Wordpress hosting with auto-scaling on Cloudways • AdFully Managed hosting built for WordPress-powered businesses that need reliable, auto-scalable hosting. Cloudways SafeUpdates now available.
- ESICCC: A systematic computational framework for evaluation, selection and integration of cell-cell communication inference methods☆13Jan 10, 2024Updated 2 years ago
- Custom codes accompanying single cell spatial transcriptomic study on the healthy human lung☆13Dec 27, 2023Updated 2 years ago
- ☆12Nov 19, 2023Updated 2 years ago
- Mapping the Functional Landscape of TCR Repertoire☆36Oct 8, 2021Updated 4 years ago
- A python-based package and software to predict metabolite mediated cell-cell communications by single-cell RNA-seq data☆79Jul 25, 2025Updated 8 months ago
- ☆24Aug 2, 2024Updated last year
- data for spacejam2☆18Aug 3, 2022Updated 3 years ago
- A novel machine learning pipeline to analyse spatial transcriptomics data☆244Mar 12, 2026Updated 3 weeks ago
- ☆134Apr 24, 2024Updated last year
- DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- Spatially resolved transcriptomic analysis☆65Nov 17, 2022Updated 3 years ago
- Deciphering cell-cell communication from spatially resolved transcriptomic data at single-cell resolution with subgraph-based attentional…☆29Sep 6, 2024Updated last year
- Reproducibility for the "Harmonization and Annotation of Single-cell Transcriptomics data with Deep Generative Models" paper☆13Jul 15, 2022Updated 3 years ago
- Single-cell RNA-seq data-based inference of multilayer inter- and intra-cellular signaling networks☆30Aug 16, 2021Updated 4 years ago
- Niche Interactions and Cellular Heterogeneity in Extracellular Signaling☆58Jan 29, 2026Updated 2 months ago
- Hands-on training on the latest methodologies and applications for the analysis of nucleic acids from eukaryotic single cells☆17Jul 26, 2024Updated last year
- Analysis of cell-cell communication at single-cell resolution☆106Sep 10, 2024Updated last year
- R package to infer multicellular programs from single-cell data using multi-omics factor analysis (MOFA)☆12Aug 17, 2023Updated 2 years ago
- ☆27Jun 4, 2023Updated 2 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting with the flexibility to host WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Cloudways by DigitalOcean.
- Deep soft K-means clustering with self-training for single cell RNA sequence data☆30Jul 20, 2020Updated 5 years ago
- Deep learning reveals predictive sequence concepts within immune repertoires to immunotherapy☆14Sep 17, 2022Updated 3 years ago
- ☆17Sep 28, 2022Updated 3 years ago
- Higher level repo for aggregating all of Atlas workflow logic for Single Cell☆14Mar 31, 2026Updated last week
- NHC: A computational approach to detect physiological homogeneity in the midst of genetic heterogeneity☆12Feb 25, 2026Updated last month
- LIANA: a LIgand-receptor ANalysis frAmework☆238Aug 7, 2024Updated last year
- Deciphering driver regulators of cell fate decisions from single-cell RNA-seq data☆30Oct 24, 2024Updated last year
- Multi-modal single cell analysis pipelines☆62Dec 11, 2025Updated 3 months ago
- A sandbox for benchmarking detection of out-of-reference cells in single-cell genomics data☆14Oct 21, 2024Updated last year
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting with the flexibility to host WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Cloudways by DigitalOcean.
- A napari plugin to render BrainGlobe atlases and associated data as layers.☆24Updated this week
- ☆28Nov 21, 2019Updated 6 years ago
- Interactive applications of stlearn☆15May 1, 2023Updated 2 years ago
- CytoSPACE: Optimal mapping of scRNA-seq data to spatial transcriptomics data☆139Feb 20, 2025Updated last year
- single cell analysis of treatment naive and treated human PDAC☆25May 27, 2022Updated 3 years ago
- Feature selection for preserving biological trajectories in single-cell data☆21May 29, 2025Updated 10 months ago
- Profile purification of single-cell spatial transcriptomics data☆30Nov 13, 2025Updated 4 months ago