JiangBioLab / DeepCCI
☆21Updated 2 years ago
Alternatives and similar repositories for DeepCCI:
Users that are interested in DeepCCI are comparing it to the libraries listed below
- ☆44Updated 9 months ago
- Gene group activity utility functions for Scanpy☆67Updated 2 months ago
- CeLEry: cell location recovery in single-cell RNA sequencing☆33Updated last week
- Spatial direct messaging detected by bivariate Moran☆25Updated last month
- an integrative algorithm to distinguish spatially variable cell subclusters by reconstructing cells onto a pseudo space with spatial tran…☆22Updated last year
- Spatial Cellular Estimator for Tumors☆47Updated this week
- Python package for analysis of multiomic single cell RNA-seq and ATAC-seq.☆60Updated 9 months ago
- Collection of scripts for analysis of pan fetal immune atlas☆26Updated 2 years ago
- Single cell omics biology annotations☆49Updated 3 weeks ago
- iterative clustering pipeline of big single cell datasets.☆29Updated 2 weeks ago
- Analysis of imbalanced data and its impacts in a scRNA-seq integration setting☆30Updated 2 months ago
- Multimodal weakly supervised learning to identify disease-specific changes in single-cell atlases☆22Updated 3 months ago
- Evaluation of cell-cell interaction methods by integrating single-cell RNA sequencing data with spatial information☆19Updated 2 years ago
- inferring regulatory cellular dynamics☆34Updated last month
- Awesome list of tools and methods to perform spatial transcriptomic data analysis.☆39Updated 3 years ago
- Data processing and analysis workflow for GAGE-seq, a coassay of single-cell HiC and single-cell RNA-seq☆11Updated 10 months ago
- ☆23Updated last month
- Deciphering driver regulators of cell fate decisions from single-cell RNA-seq data☆22Updated 3 months ago
- ☆46Updated last year
- Predict RNA velocity through deep learning☆66Updated last year
- Scalable sequence-informed embedding of single-cell ATAC-seq data with CellSpace☆36Updated last month
- Code to reproduce the analysis of "Decoding gene regulation in the mouse embryo using single-cell multi-omics""☆40Updated 2 years ago
- PhyloVelo, Phylogeny-based transcriptomic velocity of single cells☆42Updated last year
- ☆12Updated 2 years ago
- A novel computational method for inferring cell-type-specific signaling networks using single-cell transcriptomics data for better charac…☆39Updated 5 months ago
- STRIDE (Spatial TRanscRIptomics DEconvolution by topic modelling) is a cell-type deconvolution tool for spatial transcriptomics by using …☆24Updated last year
- A computational method to rank and infer drug-responsive cell population towards in-silico drug perturbation using a target-perturbed gen…☆45Updated 6 months ago
- ☆26Updated last year
- STRIDE (Spatial TRanscRIptomics DEconvolution by topic modelling) is a cell-type deconvolution tool for spatial transcriptomics by using …☆18Updated 2 years ago
- NATMI: Network Analysis Toolkit for the Multicellular Interactions☆35Updated 3 years ago