JiangBioLab / DeepCCILinks
☆21Updated 3 years ago
Alternatives and similar repositories for DeepCCI
Users that are interested in DeepCCI are comparing it to the libraries listed below
Sorting:
- ☆50Updated 4 months ago
- Spatial direct messaging detected by bivariate Moran☆28Updated 2 months ago
- CAST package☆40Updated 10 months ago
- UniCell Deconvolve - Cloud Cell Type Deconvolution For Transcriptomic Data☆26Updated 2 years ago
- Single cell omics biology annotations☆51Updated 5 months ago
- ☆55Updated last year
- ☆31Updated 7 months ago
- Code used to benchmark Xenium☆66Updated last year
- Gene group activity utility functions for Scanpy☆88Updated 9 months ago
- TACCO: Transfer of Annotations to Cells and their COmbinations☆57Updated 3 weeks ago
- Knowledge-graph-based cell-cell communication inference for spatially resolved transcriptomic data☆72Updated 8 months ago
- Interactive applications of stlearn☆15Updated 2 years ago
- Enhancing spatial transcriptomics data by predicting the expression of unmeasured genes from a dissociated scRNA-seq data☆36Updated last year
- Spatial Cellular Estimator for Tumors☆57Updated last month
- SPROD: Spatial expression profiling de-noising☆37Updated 2 years ago
- CeLEry: cell location recovery in single-cell RNA sequencing☆35Updated 7 months ago
- Predict RNA velocity through deep learning☆70Updated last year
- ☆31Updated 2 months ago
- cTPnet Package☆25Updated 3 years ago
- Multimodal weakly supervised learning to identify disease-specific changes in single-cell atlases☆34Updated last month
- ☆62Updated last month
- Evaluation of cell-cell interaction methods by integrating single-cell RNA sequencing data with spatial information☆21Updated 2 years ago
- GASTON: deep learning algorithm learns "topography" of a tissue slice from spatial transcriptomics data☆59Updated 3 months ago
- Deciphering cell-cell communication from spatially resolved transcriptomic data at single-cell resolution with subgraph-based attentional…☆26Updated last year
- User-friendly tool to infer cell-cell interactions and communication from gene expression of interacting proteins☆65Updated 3 weeks ago
- End-to-end analysis of spatial multi-omics data☆94Updated last month
- ☆13Updated 2 months ago
- Python implementation of Milo for differential abundance testing on KNN graph☆74Updated 7 months ago
- Integrative and Reference-Informed Spatial Domain Detection for Spatial Transcriptomics☆37Updated 7 months ago
- Deciphering driver regulators of cell fate decisions from single-cell RNA-seq data☆25Updated 11 months ago