brineylab / grp-paper
Code and data used in The Great Repertoire Project
☆29Updated 3 years ago
Related projects ⓘ
Alternatives and complementary repositories for grp-paper
- Comparison of Adaptive Immune Receptor Repertoires☆25Updated last year
- ☆38Updated 11 months ago
- flexible CDR based distance metrics☆55Updated 3 months ago
- IGoR is a C++ software designed to infer V(D)J recombination related processes from sequencing data. Find full documentation at:☆49Updated 2 years ago
- Summary statistics for repertoires☆16Updated last year
- RNA structure probing and post-transcriptional modifications mapping high-throughput data analysis☆35Updated 3 weeks ago
- Analysis of antibody NGS data☆12Updated 2 years ago
- ⚙️ Matching T-cell repertoire against a database of TCR antigen specificities☆38Updated 6 years ago
- Python package to plot sequence logos☆29Updated last year
- Compute generation probabilities of CDR3 amino acid and nucleotide sequences☆48Updated 3 years ago
- ☆37Updated 4 years ago
- HLA-II ligand predictor.☆35Updated last year
- B- and T-cell receptor sequence annotation, simulation, clonal family and germline inference, and affinity prediction☆57Updated this week
- immuneML is a platform for machine learning analysis of adaptive immune receptor repertoire data.☆62Updated this week
- Infer selection pressures on features of amino acid CDR3 sequences.☆23Updated 7 months ago
- ☆46Updated 2 years ago
- ☆13Updated last week
- BraCeR - reconstruction of B cell receptor sequences from single-cell RNAseq data☆41Updated 2 months ago
- A lite implementation of tfmodisco, a motif discovery algorithm for genomics experiments.☆58Updated 4 months ago
- Decombinator v5: fast, error-correcting analysis of TCR repertoires☆22Updated this week
- Collection of papers related to BCR repertoire analyses☆17Updated 2 years ago
- Molecular interactions inference from single-cell multi-omics data☆22Updated 2 weeks ago
- Predicting gene expression levels from genomic sequences☆50Updated 4 years ago
- Absolve antibody variable domain sequence analysis☆16Updated 6 years ago
- FREE Divergence Error-Correcting DNA Barcodes☆25Updated 4 months ago
- iCodon customizes gene expression based on the codon composition☆13Updated last year
- Immunoglobulin and T-Cell receptor rearrangement software☆47Updated last year
- This repository hosts a minimal version of a Python API for BPNet.☆32Updated 3 months ago
- Downloader for ENCODE☆31Updated 4 years ago
- TCRconv is a deep learning model for predicting recognition between T cell receptors and epitopes. It uses protBERT embeddings for the TC…☆23Updated 2 years ago