Alternatives and similar repositories for RESP

Users that are interested in RESP are comparing it to the libraries listed below

• churchlab / low-N-protein-engineering
  Code and data to reproduce analyses in Biswas et al. (2020) "Low-N protein engineering with data-efficient deep learning".
  ☆60Updated 4 years ago
• manifoldbio / mber-open
  mBER - Manifold Binder Engineering and Refinement. mBER enables antibody binder design by leveraging structure templates and sequence con…
  ☆87Updated 2 months ago
• tymor22 / tm-vec
  ☆74Updated last year
• patrickbryant1 / SpeedPPI
  Rapid protein-protein interaction network creation from multiple sequence alignments with Deep Learning
  ☆90Updated last year
• piercelab / tcrmodel2
  ☆45Updated 9 months ago
• KULL-Centre / _2022_ML-ddG-Blaabjerg
  ☆54Updated 4 months ago
• AbSciBio / igdesign
  ☆47Updated 11 months ago
• SNU-CSSB / RF2-Lite
  ☆31Updated last year
• alchemab / antiberta
  Public repository describing training and testing of AntiBERTa.
  ☆61Updated 2 years ago
• brennanaba / ImmuneBuilder
  Predict the structure of immune receptor proteins
  ☆56Updated last year
• Doudna-lab / GARNET_DL
  ☆36Updated 11 months ago
• CongLabCode / RoseTTAFold2-PPI
  Fast deep learning methods for large-scale protein-protein interaction screening
  ☆111Updated 4 months ago
• AIforGreatGood / biotransfer
  Machine learning-driven antibody design
  ☆62Updated 2 years ago
• psipred / s4pred
  A tool for accurate prediction of a protein's secondary structure from only it's amino acid sequence
  ☆60Updated 8 months ago
• gv20-therapeutics / antibody-in-pytorch
  Machine learning models for antibody sequences in PyTorch
  ☆41Updated 4 years ago
• xinyu-dev / annotate_v
  Antibody Annotation - Annotate VH and VL sequences (FR and CDR) in Python
  ☆30Updated 2 years ago
• ranganathanlab / bmDCA
  Fork of matteofigliuzzi/bmDCA repository for Boltzmann-machine Direct Coupling Analysis (bmDCA).
  ☆35Updated 5 years ago
• MIDIfactory / AlphaFastPPi
  Fast AlphaFold-Multimer based pipeline for Protein-Protein Interaction (PPI) screening
  ☆39Updated last year
• aqlaboratory / rgn2
  ☆108Updated 2 years ago
• oxpig / CaLM
  Protein language model trained on coding DNA
  ☆52Updated last year
• gitter-lab / nn4dms
  Neural networks for deep mutational scanning data
  ☆71Updated 7 months ago
• jlparkI / AntPack
  Tools for annotation, processing and ML for antibody sequences
  ☆35Updated last week
• oxpig / SPACE2
  Tool for rapid clustering of antibody models by the structure of their CDRs.
  ☆23Updated 5 months ago
• ivanjayapurna / low-n-protein-engineering
  A complete, open-source, end-to-end re-implementation of the Church Lab's low-N eUniRep in silico protein engineering pipeline presented …
  ☆27Updated 5 years ago
• KIT-MBS / pydca
  Direct coupling analysis software for protein and RNA sequences
  ☆53Updated 5 months ago
• sacdallago / biotrainer
  Biological prediction models made simple.
  ☆47Updated last month
• GreiffLab / manuscript_ab_epitope_interaction
  ☆25Updated last year
• csi-greifflab / manuscript_insilico_antibody_generation
  ☆23Updated 4 years ago
• VarunUllanat / mint
  Learning the language of protein-protein interactions
  ☆107Updated 3 months ago
• oxpig / AbLang2
  An antibody-specific language model focusing on NGL prediction
  ☆32Updated last year