Wang-lab-UCSD / RESPLinks
The code used to generate the results from Parkinson / Hard et al. 2022
☆17Updated 6 months ago
Alternatives and similar repositories for RESP
Users that are interested in RESP are comparing it to the libraries listed below
Sorting:
- ☆45Updated 9 months ago
- Antibody Annotation - Annotate VH and VL sequences (FR and CDR) in Python☆30Updated 2 years ago
- Rapid protein-protein interaction network creation from multiple sequence alignments with Deep Learning☆90Updated last year
- Code and data to reproduce analyses in Biswas et al. (2020) "Low-N protein engineering with data-efficient deep learning".☆60Updated 4 years ago
- Protein language model trained on coding DNA☆53Updated last year
- Graph Network for protein-protein interface including language model features☆34Updated last year
- Tools for annotation, processing and ML for antibody sequences☆37Updated last week
- A tool for accurate prediction of a protein's secondary structure from only it's amino acid sequence☆61Updated 9 months ago
- Machine learning-driven antibody design☆63Updated 2 years ago
- Predict the structure of immune receptor proteins☆59Updated last year
- Machine learning models for antibody sequences in PyTorch☆41Updated 4 years ago
- ☆55Updated 5 months ago
- Fast deep learning methods for large-scale protein-protein interaction screening☆114Updated 5 months ago
- ☆47Updated last year
- Public repository describing training and testing of AntiBERTa.☆61Updated 2 years ago
- ☆47Updated last year
- Neural networks for deep mutational scanning data☆72Updated 7 months ago
- ☆76Updated last year
- A complete, open-source, end-to-end re-implementation of the Church Lab's low-N eUniRep in silico protein engineering pipeline presented …☆27Updated 5 years ago
- PyTorch implementation of Parapred (Liberis et al., 2018) with Paratyping (Richardson et al., 2021)☆20Updated 2 years ago
- ☆32Updated last year
- An unofficial re-implementation of AntiBERTy, an antibody-specific protein language model, in PyTorch.☆26Updated last year
- CodonBert: a BERT-based architecture tailored for codon optimization using the cross-attention mechanism.☆41Updated last year
- ☆36Updated last year
- Code repository of "Deep generative design of RNA family sequences"☆40Updated 2 months ago
- Fast AlphaFold-Multimer based pipeline for Protein-Protein Interaction (PPI) screening☆39Updated last year
- ☆25Updated 2 years ago
- Repository for Protein-Vec, a protein embedding mixture of experts model☆38Updated last year
- A structure-aware interpretable deep learning model for sequence-based prediction of protein-protein interactions☆106Updated last week
- A dataset for training and benchmarking deep learning models for RNA structure prediction☆61Updated this week