Alternatives and similar repositories for RESP

Users that are interested in RESP are comparing it to the libraries listed below

• churchlab / low-N-protein-engineering
  Code and data to reproduce analyses in Biswas et al. (2020) "Low-N protein engineering with data-efficient deep learning".
  ☆59Updated 4 years ago
• Doudna-lab / GARNET_DL
  ☆35Updated 6 months ago
• patrickbryant1 / SpeedPPI
  Rapid protein-protein interaction network creation from multiple sequence alignments with Deep Learning
  ☆89Updated last year
• GreiffLab / manuscript_ab_epitope_interaction
  ☆25Updated last year
• AIforGreatGood / biotransfer
  Machine learning-driven antibody design
  ☆60Updated 2 years ago
• piercelab / tcrmodel2
  ☆41Updated 3 months ago
• xinyu-dev / annotate_v
  Antibody Annotation - Annotate VH and VL sequences (FR and CDR) in Python
  ☆30Updated 2 years ago
• tymor22 / tm-vec
  ☆68Updated 9 months ago
• SNU-CSSB / RF2-Lite
  ☆30Updated last year
• psipred / s4pred
  A tool for accurate prediction of a protein's secondary structure from only it's amino acid sequence
  ☆54Updated 3 months ago
• CongLabCode / RoseTTAFold2-PPI
  Fast deep learning methods for large-scale protein-protein interaction screening
  ☆45Updated 2 months ago
• jas-preet / SPOT-1D-Single
  The standalone version of SPOT-1D-Single available for public use for research purposes.
  ☆23Updated last year
• pylelab / rMSA
  RNA Multiple Sequence Alignment
  ☆43Updated last year
• gitter-lab / nn4dms
  Neural networks for deep mutational scanning data
  ☆69Updated last month
• ivanjayapurna / low-n-protein-engineering
  A complete, open-source, end-to-end re-implementation of the Church Lab's low-N eUniRep in silico protein engineering pipeline presented …
  ☆27Updated 4 years ago
• KULL-Centre / _2022_ML-ddG-Blaabjerg
  ☆50Updated 3 months ago
• oxpig / CaLM
  Protein language model trained on coding DNA
  ☆47Updated 8 months ago
• debbiemarkslab / EVmutation
  Mutation effects predicted from sequence co-variation
  ☆66Updated 7 years ago
• alchemab / antiberta
  Public repository describing training and testing of AntiBERTa.
  ☆59Updated 2 years ago
• tymor22 / protein-vec
  Repository for Protein-Vec, a protein embedding mixture of experts model
  ☆38Updated last year
• robpearc / DeepFoldRNA
  ☆35Updated last year
• brennanaba / ImmuneBuilder
  Predict the structure of immune receptor proteins
  ☆51Updated 8 months ago
• AbSciBio / igdesign
  ☆41Updated 6 months ago
• seanrjohnson / protein_scoring
  Generating and scoring novel enzyme sequences with a variety of models and metrics
  ☆69Updated 3 weeks ago
• JudeWells / chainsaw
  ☆41Updated 9 months ago
• minmarg / gtalign_alpha
  GTalign, high-performance protein structure alignment, superposition and search
  ☆46Updated 2 weeks ago
• brianhie / evolocity
  Evolutionary velocity with protein language models
  ☆93Updated last year
• timkartar / DeepPBS
  Geometric deep learning of protein–DNA binding specificity
  ☆76Updated 3 months ago
• Shunsuke-1994 / rfamgen
  Code repository of "Deep generative design of RNA family sequences"
  ☆35Updated last year
• ELELAB / mutatex
  scripts and facilities for in-silico mutagenesis with FoldX
  ☆57Updated 7 months ago