gdagstn / borgesLinks
Antique or modern atlas-like depictions of non-linear dimensionality reduction for single cell data
☆18Updated 7 months ago
Alternatives and similar repositories for borges
Users that are interested in borges are comparing it to the libraries listed below
Sorting:
- R implementation of the Reshef and Rumker CNA method (https://github.com/immunogenomics/cna)☆15Updated 2 years ago
- Cell type pipes for R☆52Updated last year
- Single-cell analysis with non-negative matrix factorization☆45Updated 5 months ago
- Robust, multivariate, multi-sample, multi-celltype QC for single cell RNA-seq data☆39Updated 3 years ago
- This repository consists of scripts and workflows used for generating results, figures, and tables published in the article: Can Liu, And…☆15Updated 4 years ago
- An r package that works as a wrapper to homologene☆48Updated 2 years ago
- Extension of SpatialExperiment with sf☆56Updated last week
- Toolkit for Single-Cell Velocity☆59Updated 6 months ago
- Quantify and interpret divers of variation in multilevel gene expression experiments☆69Updated last month
- Using self-organizing maps for visualization and interpretation of cytometry data☆32Updated this week
- Tidy R query API for the harmonised and curated CELLxGENE single-cell atlas.☆93Updated last year
- Latent Embedding Multivariate Regression☆98Updated last year
- Tools for NanoString GeoMx Digital Spatial Profiler data for reading DCC and PKC files to NanoStringGeomxSet class, Normalization and QC.…☆46Updated 3 months ago
- Brings SingleCellExperiment objects to the tidyverse☆37Updated 2 months ago
- R package developed for single-cell RNA-seq analysis. It was designed using the Seurat framework, and offers existing and novel single-ce…☆32Updated last month
- R package for specialised analysis of single cell data☆40Updated 3 years ago
- From geospatial to spatial -omics☆100Updated last month
- A software package for connecting cell level features in single cell RNA sequencing data with receptor ligand activity. Please be aware t…☆18Updated last year
- Generate masks for scRNA-seq clusters on t-SNE or UMAP plots☆43Updated last week
- Cell-type Relationship Analysis Workflow Done Across Distances☆39Updated 2 months ago
- ☆97Updated 4 months ago
- scDataviz: single cell dataviz and downstream analyses☆66Updated 4 years ago
- Framework for sensitive DE testing (using neighbourhoods)☆75Updated 2 months ago
- Normalize CITEseq Data☆66Updated 2 months ago
- Annotated multivariate observation data in R☆51Updated 7 months ago
- Visualize clonal expansion via circle-packing. 'APackOfTheClones' extends 'scRepertoire' to produce a publication-ready visualization of …☆21Updated 4 months ago
- ☆71Updated 7 months ago
- ☆33Updated 2 weeks ago
- A database of useful gene signatures for single-cell analysis☆28Updated 8 months ago
- R API and htmlwidget for Vitessce☆43Updated 5 months ago