gdagstn / borges
Antique or modern atlas-like depictions of non-linear dimensionality reduction for single cell data
☆18Updated 10 months ago
Alternatives and similar repositories for borges:
Users that are interested in borges are comparing it to the libraries listed below
- R implementation of the Reshef and Rumker CNA method (https://github.com/immunogenomics/cna)☆14Updated last year
- Cell type pipes for R☆51Updated last year
- An r package that works as a wrapper to homologene☆42Updated last year
- Toolkit for Single-Cell Velocity☆54Updated last month
- Robust, multivariate, multi-sample, multi-celltype QC for single cell RNA-seq data☆36Updated 2 years ago
- Single-cell analysis with non-negative matrix factorization☆44Updated 3 months ago
- scDataviz: single cell dataviz and downstream analyses☆63Updated 3 years ago
- Brings SingleCellExperiment objects to the tidyverse☆36Updated last month
- R package developed for single-cell RNA-seq analysis. It was designed using the Seurat framework, and offers existing and novel single-ce…☆26Updated last year
- Annotated multivariate observation data in R☆45Updated 3 months ago
- R package for specialised analysis of single cell data☆36Updated 2 years ago
- Various utility functions for Seurat single-cell analysis☆44Updated 2 months ago
- ☆29Updated last year
- R API and htmlwidget for Vitessce☆39Updated 4 months ago
- A repository for benchmarking spatial deconvolution and mapping tools☆29Updated 3 weeks ago
- Perform differential expression analysis on multi-sample single cell datasets using linear mixed models☆20Updated 2 months ago
- ☆59Updated 7 months ago
- Nuclear fraction QC metric to detect empty droplets and damaged cells in scRNA-seq data☆35Updated 3 years ago
- Identify and correct invalid gene symbols☆59Updated 3 months ago
- ☆16Updated 9 months ago
- This R package for performing module repertoire analyses and generating fingerprint representations☆14Updated 3 years ago
- Visualize clonal expansion via circle-packing. 'APackOfTheClones' extends 'scRepertoire' to produce a publication-ready visualization of …☆15Updated 2 months ago
- Using Bulk Gene Expression to Estimate Cell-Type-Specific Gene Expression via Deconvolution☆44Updated last year
- Gene regulatory network containing signed transcription factor-target gene interactions☆69Updated 9 months ago
- Assorted thoughts, explanations and justifications for code in the scran package and the simpleSingleCell workflow.☆44Updated 4 years ago
- Using self-organizing maps for visualization and interpretation of cytometry data☆26Updated 7 months ago
- Tidy R query API for the harmonised and curated CELLxGENE single-cell atlas.☆90Updated last month
- R package for decontaminating the spot swapping effect and recovering true expression in spatial transcriptomics data☆27Updated 8 months ago
- ☆27Updated 3 years ago
- psupertime is pseudotime ordering for single cell RNA-seq data with sequential labels☆38Updated 2 years ago