ncborcherding / utilityLinks
Collection of Tumor-Infiltrating Lymphocyte Single-Cell Experiments with TCR
☆91Updated last week
Alternatives and similar repositories for utility
Users that are interested in utility are comparing it to the libraries listed below
Sorting:
- R package for Pathway RespOnsive GENe activity inference☆107Updated 2 years ago
- marker-based purification of cell types from single-cell RNA-seq datasets☆120Updated last month
- Efficient and precise single-cell reference atlas mapping with Symphony☆106Updated 2 years ago
- R package for semi-supervised single-cell data integration☆88Updated 2 weeks ago
- Analysis of cell-cell communication at single-cell resolution☆104Updated 11 months ago
- Direct estimation of mean and covariance from single cell RNA seq experiments☆115Updated 3 months ago
- ☆70Updated 2 years ago
- R implementation of MULTI-seq sample classification workflow☆64Updated last year
- Accompanying code for the tutorial: Annotating single cell transcriptomic maps using automated and manual methods☆96Updated 2 years ago
- R package that automatically classifies the cells in the scRNA data by segregating non-malignant cells of tumor microenviroment from the …☆108Updated 4 months ago
- R implementation of GLIPH (Grouping of Lymphocyte Interactions by Paratope Hotspots), an algorithm developed by Glanville et al to identi…☆23Updated 2 years ago
- Tools for single-cell data processing☆126Updated last year
- AUCell: score single cells with gene regulatory networks☆164Updated last year
- A tool that allows to get UMI counts from a single cell protein assay☆82Updated 4 months ago
- R package to access DoRothEA's regulons☆149Updated last year
- Data and analysis scripts for our Embryo Timecourse paper.☆69Updated 5 years ago
- A docker image for single-cell analysis☆88Updated 6 months ago
- wrapper scripts for convenient STARsolo processing of 10X and other scRNA-seq☆63Updated 2 months ago
- Single Cell Cluster Evaluation☆96Updated 4 years ago
- Snakemake pipeline that works with the scIB package to benchmark data integration methods.☆76Updated 7 months ago
- Gene signature extraction and cell-identity recognition at individual cell level from single-cell RNA-seq.☆95Updated last year
- Using TCR and expression for sequence embedding☆58Updated last week
- Single-Cell Clustering Assessment Framework☆105Updated last year
- Gene regulatory network containing signed transcription factor-target gene interactions☆86Updated 3 months ago
- Publication Page for Satpathy*, Granja* et al 2019☆95Updated 5 years ago
- Framework for sensitive DE testing (using neighbourhoods)☆70Updated last year
- A Shiny web app for mapping datasets using Seurat v4☆132Updated 9 months ago
- ☆47Updated 3 years ago
- Tutorial of single-cell RNA-ATAC multiomic sequencing data analysis☆65Updated last year
- Metacell - Single-cell mRNA Analysis☆116Updated 7 months ago